NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1003303

Scaffold Ga0209190_1003303


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1003303 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10716
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (41.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022372Metagenome / Metatranscriptome214Y
F078391Metagenome116N
F095140Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_10033036F022372GGAMSTTTITINIAFLTEDQRDAATLLFARSGGWQATIDGEPNPVSAEDYGVTMIATYLRQRVSEQSAYDAQIAAAQAVADLLDGVTVTTPAEFAMIFPTPPIVTPV
Ga0209190_10033037F078391N/AMNDLLGSIGRFLANEWDGFYQRVGVNVSVTTLGILTPLVHAELNMWLQTTMYVSGLIVLVWNFWGAQKELKRKRMRDEEAAASWIRVAQAESKFPKQKTKDL
Ga0209190_10033038F095140N/AMNTKNLAGYGSIATSALTALSGAPYALGDVATIIPPAWKAKLFVISAIATMILRLIRDHQGASPAK
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