NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1003945

Scaffold Ga0209190_1003945


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1003945 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9762
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F004132Metagenome / Metatranscriptome451Y
F007112Metagenome357Y
F011077Metagenome / Metatranscriptome295Y
F084233Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_10039451F000808N/AALTTSYDGELIHTLRVSDMLEAVNAWTKCVDYGTAKQYATYNLSDPTGKMYTKTFYTNGEVVIK
Ga0209190_100394512F084233N/AMTLTVEIYEMDYSCSPGGVNCWEVSTNDELCTTGFKTAGEALEYVLDKYPNHELQLNVKSLNWYFKEYADEYAV
Ga0209190_100394517F007112AGGAMHTLHYVAVEADNKQEAFDKVVIGLQPNEDGYRLSDWSDWHVVGGGRYSSNAHKENKANPMGGSYTNDPADVIGYAENKEKFQEVTKDILKFRSQNMNRNIVEIKTDSFISQMVDYASEGGRAAWNGDTLMNVYSIKQAAEMLLGSWTCDSGFYDLQEYVSEFEYLDQRLDKPEQAVRQYLVPVDFHF
Ga0209190_100394525F011077AGGAMDTNLTWAEEDVNLWKGWTYSPKNNRYYFNDIGDESLASFWADDFLNQAYL
Ga0209190_10039459F004132N/ALHFTGHGDIIVLTEKEPLMSEVMTQEQLSVPYNPNLLVTYKAIPNTYAAPESPTFMTDKVTDLEWELHQGRTNADRAAERRADIAWLEDQIPEWYDPNYDKEDVLKALAEHFAINPMKQMSVYGTVTFSGTISIPLSEIEDFDLSNVTIDAEVSSYEYEADLTVDDVSLEEN
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