NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1005551

Scaffold Ga0209190_1005551


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1005551 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8046
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001059Metagenome / Metatranscriptome790Y
F001915Metagenome / Metatranscriptome617Y
F006264Metagenome / Metatranscriptome377Y
F103134Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100555113F103134GAGGMYGRVISGGKQMSKGLTKGINDKLAGYEEENERRAVIATAVKNAFTVRHLSDQTTNNSNNGKFQTVKEKAKVNP
Ga0209190_100555115F001059AGGAMATYDIEALKADLPTAKDLAQFVYDKTQIALDLVGKSKDDQYQVAKNALEGKKVPIEFITEQNPYVDKKDLIPVDELKVLPERNKELPDAGSQVHYFGATNMPHPLDPQSDKKVAIDFRKYENGLITYQVVAPVEQIAVGSRINKYGQTVPEKYTWLDPRTEELIMRRPDGTFTERGRGLHTYLIGEKGGGVWTLIDRDMVSVSAKNIADPWA
Ga0209190_100555116F006264N/AMEDFSAIFKQRLSGQAEVCARKSLEWLQKDLQGEFKLLPIDIYYLASAANILLNIRDTYGKK
Ga0209190_10055519F001915AGGAMEWSLAHPLHDVEDIVEMADSFFGHEADGIVTRSRAVFRHRVTVACTEQVFNKSKEFIAVCRENPLVELDEGHPDQPKLMGFCWFDRGGYTTYSNEEISNAKFHHLDLSLPVRTRVRLINEMIDQHILWACKNSIPIVCSTSIRSEHDGFMKIHAKRGFAVNGSYAWIRTDKGMECLTKK
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