NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1024053

Scaffold Ga0209190_1024053


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1024053 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3365
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015467Metagenome254Y
F023588Metagenome209N
F035297Metagenome172N

Sequences

Protein IDFamilyRBSSequence
Ga0209190_10240533F035297AGGAGGMEPLTNRIKAGWIIAFTMIGWLFFLLPMTGEDIPQGHPTPVSQQAWITWIIINFVMLILVHLLISKEHRANKRAIKTLKRIAKARLNHPTHQ
Ga0209190_10240534F015467GGAMRRITATIVTTLTLLIGIGTAHAVQAPKPTHSPSVTRIEVIPKDRLEVQPTIVFRHGDISWLPQLATEAGWPPRTWKRLSELVLRESGGCPARRGGDIVNKSCEVIGHDGSDHASDSGLLQINGINYNPKRNKYAPICTQMKICTQEPLLDALTNLKAGLLLFRVTGSDWSPWIVPEGGW
Ga0209190_10240538F023588AGGTGGMTQPMVLVSWADAHSGVATWTPIDGLDKDEMIVTTCGFLLATCDGGKPDHITIYQSRTMEDDVDHVLHIPVAMVRQMAICTPETLTK
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