NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1033449

Scaffold Ga0209190_1033449


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1033449 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2735
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022372Metagenome / Metatranscriptome214Y
F050981Metagenome / Metatranscriptome144N
F083886Metagenome / Metatranscriptome112N
F100656Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_10334491F050981GGAGMRWLAIICLSASSVCAQISDDELSKITKEEIVLTIKHLRALTADAIATADRAIASEARVQASLTSATNALMDSQSQLLKVDQDIRNLQAQTEEQTRIAVGAKADAVKAQRLADHRGNLLGWLGAGLLCMLC
Ga0209190_10334492F100656N/AMTTLKNSLILLALCMLCACQTPCPKPSPAVVSVAQAKASTASASVAVRSAIDDSKGTIIEIKKIRTAQDRVDAKSVLILKWLEFQR
Ga0209190_10334493F083886N/AMLRNEIFGDLWRGSVGIAGSWVAVISSMHEEIDSIAKTAGMILGCLASLAMFISLCQRIYHNWQTRKWEGVIFKQTDDDLKK
Ga0209190_10334494F022372N/AMSTTITIDVAFLSEEQRNAATLLFARSGGWQPLVDGEPNPVSAEEYGVTMIANYLQLGVASQSAYDAQIAAAQEVADLLDGVTVTTPPDFPTPPITTPV
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