NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1036285

Scaffold Ga0209190_1036285


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1036285 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2602
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007752Metagenome345Y
F076074Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0209190_10362855F007752N/AMENTTMKLWEIKNFQSSSVKSLFIGKTANGQDCIGCAWDANTLYVYAYEGIVDTFMYYMERFNSVGKAMAFTKLKDGMEEGFYFSTYASGRKQQNHNQRYTLRRYETMTNHLVVHQNVCFDTPENAIKNLISSGDLEAERSYFVDCMTRRVG
Ga0209190_10362856F076074N/AMSEYNGWKNETTWTVNILLMETIEQLVKSGYSLNDVASHFYKEWKIDDLNWHVNQIFGCAWKQIDWWTLYKRAEENVKQTAESVSE
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Institute for Fundamental Biomedical Research
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