NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1000015

Scaffold Ga0209085_1000015


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1000015 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)115655
Total Scaffold Genes184 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)141 (76.63%)
Novel Protein Genes34 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)26 (76.47%)
Associated Families34

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000311Metagenome / Metatranscriptome1326Y
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F000441Metagenome / Metatranscriptome1136Y
F000852Metagenome / Metatranscriptome860Y
F000980Metagenome / Metatranscriptome814Y
F001125Metagenome / Metatranscriptome769Y
F001280Metagenome / Metatranscriptome732Y
F001460Metagenome / Metatranscriptome690Y
F002501Metagenome / Metatranscriptome553Y
F003379Metagenome / Metatranscriptome490Y
F003408Metagenome / Metatranscriptome488Y
F004051Metagenome / Metatranscriptome455Y
F005741Metagenome / Metatranscriptome391Y
F006841Metagenome / Metatranscriptome363Y
F006846Metagenome / Metatranscriptome363Y
F008245Metagenome / Metatranscriptome336N
F009961Metagenome / Metatranscriptome310Y
F011299Metagenome / Metatranscriptome292Y
F011394Metagenome / Metatranscriptome291Y
F012456Metagenome / Metatranscriptome280Y
F014140Metagenome / Metatranscriptome265Y
F021988Metagenome / Metatranscriptome216Y
F023341Metagenome / Metatranscriptome210Y
F031497Metagenome / Metatranscriptome182Y
F042904Metagenome / Metatranscriptome157Y
F051930Metagenome / Metatranscriptome143Y
F066776Metagenome / Metatranscriptome126Y
F070122Metagenome123N
F072349Metagenome / Metatranscriptome121Y
F084217Metagenome / Metatranscriptome112N
F099281Metagenome / Metatranscriptome103N
F105192Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209085_100001510F072349AGGAGGMDKVLCYSCNKSKNQLEAKKSSLLAVNLLLCQTCTDNKFEPRWIIILAGRQYGPEHVKEHIAKKRYVGTDITASELLI
Ga0209085_100001511F105192N/AMKINLYQILITLAASGISGIVTALYADRKSKKERAQMAADKARDNMLLEIKDLQIKLYQLEKDLSEWKEKYYEAIQELIKVKTELEKTVIKLSHAEIHLKED
Ga0209085_1000015110F099281GGAMATVDKNFKVKNGLNVTGAATFNAAVNVDNLVLNSTPIAYNSSTGRLQIQIGGVWKDIAFLSDAAEDTNAVTFMDIGLAIDYDGQPIYTVYANGVNTTGTKFANGGDYSTETYSMTFDSGTIN
Ga0209085_1000015129F070122N/AMSSIVDSLMPMEADIYVQEDEQDPDTGAIKKNWNYSRTIACSAKGIISNSGTARSGDKQNFSNRYANEQTIEIRTNLQINYREKISNIRDIQGNVIWKELNYPTETPTVFEVFSSTPITDPFGNILAYNSIAKRSENQEIGL
Ga0209085_1000015130F012456GGALDSSVALIQTASGLERLMAGSVPGVLKDSTVAQVSAFLYYEASVLSKLTTNDAFKKLFKTTVFNQIEKDFSEYLDSQARIKQKSLQHVYEWNKAGNPAARLFKLNRLDTEGLSFRINYDFKLSKSTVPSTNKLQKKKYVFANKASIMESGMPVVIRPRSAERLVFELDGETVFMPKGTSVTVKRPGGTASTNQFALAYGRFFGGPLVNSSIKSSGLQRIFNSKMAATLDVPMNIKKVQYIFSPGKIRLQADAALERSFGGSL
Ga0209085_1000015131F009961GGAGGMTVDYKIDAMFELRKFLWKELKATGIFDKNDYYSDNLNAEIIPIIPVQQSPELDQFLNGKKHIVYDKIGLSFEDIWLLACEKVLFTIYSTDITDIYEIRNLMMDLFRRMDESARDVNNSSDSTKLIFHSIHVVETSPIEPSSELKGFLSADVILEVKYSRTTDGRGRFD
Ga0209085_1000015133F006841AGGAGGLATTVYDVEEIQLQNGATVKLKPLTIKELREFMKVIQRTQEVTSEDETLTILIEACGVALKKQLPDLVADKDAFEDTLDVPTINRILEVCGGIKMDDPNQLAAAVLAGQN
Ga0209085_1000015134F003408AGAAGMPELIQTFKSMQKTESEKRKFLASIQGVDLNENSNQNEEGSSFEDVRRRALGINASADDVVSLQGSFASEAGFGIGAGLGYSIE
Ga0209085_1000015144F002501N/AMWCGKCGGRVFVDRVFSQKLHMELFCIMCGKRWMCNKETSAFGKWLDQKETANQKTYGIS
Ga0209085_100001516F042904N/AMAEQTVLEGIIEDVATELYNKWSAALPEDERNQQAFSAMSKNAHETTLFVIQNFMNKFNDAAEQLKGE
Ga0209085_1000015160F008245AGGAMTEDKNTLQLISDITEFNDLHEYMQDEHLDKALAIVVKILMNPEVPSAKAPMLIMELQAMSTKFAVMASVYSTIAKDKSGTVNNNKKNVYYSVKESIDKLVDALKYVVRYN
Ga0209085_1000015167F000369N/AMTELEPAVHFDRMNKVVQELLKGNSATQIATLTGFSRKEVLEYVDEWKSVVHNDQNMRDRAREAISGADEHYAMLIKEAWKTVEDADTQGQLNVKAGALKLIADIETKRIAMLQSVGVLENSQLASQIAETERKQELLVGILKEVTAGCPKCKMEVAKRLSQITGIVESIKIEDAEVITNVQ
Ga0209085_1000015170F000376AGGAMSEYQEKAKECKCCSKHVPLPTVLREYSGIVVCPTTFANIVEYKRIWESYGQRPMGSIRKHFSEYVQQIVEKEFVK
Ga0209085_1000015183F023341AGGAMPVYEYKCSYDDAHPTMSTHRSIMDEDPGYTCVECDSVMTRHFTPFGIQFKGNGFYKTDNVK
Ga0209085_100001525F001280GAGMCMDCGCGINSVGMGSGMTPVTIEDVSRDGESGTTLGMVSTPEETRQFINEQ
Ga0209085_100001526F021988N/AMSNNIKKEDGTGMVPPANAGAPAGAVTSTQTPKRYPRQGVKIDTNKHGIRRETSLIPKPVKKTGRKKI
Ga0209085_100001534F006846AGGAMIYNIVEKYLMRPKRLREAIQAVVRDNDELLRMIKEAENEEPTNLTWSEGDKWYGWTYNSNAKRYYFDDIGNESLMGLWEDQWKREEA
Ga0209085_10000154F014140N/AMNKYRIKLDVEVEVEAFNTEDASEYIHDIFNIDDEIKKVNIVKITNK
Ga0209085_100001548F031497AGGCGGMSKSPEIKVAESLVNLMDDHWFNPTVFGRYLAEQPLYTIDRVMEMIVSVISEQAKLYNVYSNRGESTEGLSLANELNECIKSYQQDNNLNNLKLPSRSYTVKKREEPKATYKFGWRSEELDPFN
Ga0209085_100001549F000852GGAMATKREYLKAQGITVGVRGRFSGAAKVALAEAEKAGVVFTKEVTNKAK
Ga0209085_100001550F000441AGGAGGMRMSDQYINDQLNTAQKLLWGGSETENIEAHNIIAKLIKDRMELSDQN
Ga0209085_100001552F000263AGGMNNEDIGLPPHLQRLVNYGVSGLDIMHGELKNLMLIAEQQLASAIETEEESEEAMDSMERTRCEGALDTLADIYNLTYQLSFAIGERTL
Ga0209085_100001554F001460GAGGMLGYTESDLNKMINAVHDAKLFYLRTPSDLMDKTELRNDLEMAVSFMQGLWAEGYFE
Ga0209085_100001557F001125AGGCGGMGDRANFGFRQSNENVVFLYGHWAGHRMLENLADCVLKAKPRWNDEAYATRICISNLIGDEWSSETGWGITVNELSDNEHKVPIIDWKNKTFTLMEEDLQTVVFSTSLEAFVDKYSSQLSMV
Ga0209085_100001560F000311GAGMYFELTAPDRLSLEMAYWDAQIMGLDPEFMPPLTFNIGTGSIEKVSRIRDKYNLKESYWSDKEATGY
Ga0209085_100001561F000980N/AMTTWNKYTHVCHTCDALIEYTSTRDVINVTCECGGNTAYLSVEDATISPSNQTKEEKMEETTTPAVTVPDTYNANLLVTYKVIRGYSDAEYATDKVASLEWDLHNGRQSQKRVTTLLSNIDAAKEIICEAYEDSEDKDTLRAIAEALGIELIKEVLFTATLEVSGTYTYNILENDYELDLESEVYDALYADSNNGNIEINDTEVCNVREA
Ga0209085_100001564F005741AGGMARFRVEIYDANKANDVTIYSEQGVDKEHLTELVFSNIRRFSGKVNAYVFDMQKKKKTTAMFLNEDTVAKINS
Ga0209085_100001566F004051AGGAMTVNGYTYKVGDLFTTLKSKKTGVIKEIIPNSSGSVRVLLEMPTKETRWTTVSNASLV
Ga0209085_10000157F066776AGGVLNLTEKGVEVFIKRFQSKIQESFWNNYDLVIWKKDNGGYTDTKGMYRKDAWGKSEKISVDQKGIWKLPKKYVKYFK
Ga0209085_100001570F011299GGAMMTRKHFEATAEILKFMSDKIHPAVFSKTVNDFAVMFANENPNFDVNKFHEASGYHVPNFSSR
Ga0209085_100001579F084217AGGCGGMNDYLNYQDEVYNDLVSEFGEEITLAYHEANIAEM
Ga0209085_100001587F003379AGGAMKKIWALVSTIAIAILSGVALSKFLNWAGQKEIFDFDLDEDIDNEDF
Ga0209085_10000159F011394GAGMFIDKNKDHFKYGINEWTGEPNKPVFYNKDMAKKIREIKKPTPTLEMDIVKYPEFLAIRLYENNFAQYDGSMRVRVIEYVEMVKNILESYGVRVELEGKPGGKNHG
Ga0209085_100001595F051930AGGAGMKIQYVSTYISMSEEGLVEKLLCPVDQSILFCNQDLEENIYLYCLDCEYKNNIGKSTYDKIVKSVEENINV
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