Scaffold Ga0209085

Basic Information
Taxon OID	3300027741 Open in IMG/M
Scaffold ID	Ga0209085_1000029 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027741 Open in IMG/M

Scaffold ID

Ga0209085_1000029 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	97533
Total Scaffold Genes	140 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	105 (75.00%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (63.64%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

97533

Total Scaffold Genes

140 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

105 (75.00%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (63.64%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F015208	Metagenome / Metatranscriptome	256	Y
F019426	Metagenome	229	Y
F028070	Metagenome / Metatranscriptome	192	Y
F028168	Metagenome	192	Y
F037030	Metagenome / Metatranscriptome	168	Y
F041564	Metagenome / Metatranscriptome	159	Y
F042147	Metagenome / Metatranscriptome	158	Y
F064358	Metagenome / Metatranscriptome	128	Y
F071905	Metagenome	121	Y
F080046	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100002911	F064358	GGA	MQCFSCGKQKNELHPKKSDIIDGVTLFMCQTCIDSKFEPRWVIILSGRQNGVESVKDYIIKRRYIGRIIDAEELIA
Ga0209085_1000029122	F037030	AGGAGG	MNNENKVRIRTALVMVYVSIITLLFGINSEAHAQMKEAIVYNKNILYINKFNNLVNIKDMINIDYNNILKRKVHTKTFYLVNDLSSRDTFQMPDYSHELNLKTTRVDKRVIISRLANALKSTETGGAGAYYRKSYSSSACGAYQYMPETWNNYMGYKNPCKAPEWVQDARIIHELEFNYKKYHDWTKVIASHLMPSRANNKKTWNKPVSGNPTVAQYVNSVLNKANLVAA
Ga0209085_1000029128	F000684	AGGA	MTLSGYTYQIGDLFTTSKTGVTGRIASFSPISNKVTRVNLILANGSRRFAMVKTTK
Ga0209085_100002913	F028070	N/A	MAKKIRDVKVPVKGLILDIRARPNYLALTVYESNVMEYSENQRMALMDYLLLIRKLIMSYGTPCEIEGMKYTDEQARKQRRTS
Ga0209085_1000029131	F080046	GGAG	MSLSLANKLAQDKFFLPPSKYINHKVVEILSLNDETETMSVTLQKYGISRSANAVKGNLITLELPYAEFKNLNGWGKNK
Ga0209085_1000029138	F015208	GAGG	MYKITVTYDENKSPDFSFQYADELQAHKEFAKFIDWGFADKYSTVNLYTPSGKCYTKIFYREGRRVVER
Ga0209085_100002917	F019426	N/A	MYKDGNPVLVHFRKEKMRVIVFGSKDWSDYNDLIRQLTVLIDDRKHFYPEDTEYTFVHTGMRGAENMVTEYIGKTEKFLRQKGYKIKEEIIRDKSGLADHSLIESMPDFALVFGDSPRNRSCVKLLEAYAVPHRYIK
Ga0209085_100002920	F041564	N/A	MEYDPSNEEHREVMERLVEEGAAILDGIDEDGEPIYKFDMNLLEEVMPELHQAMMDDMDKVLIDLYQKGLIEISYDEDLNAQMSVSPEGRQALENAGFDMDSSEEEEY
Ga0209085_100002936	F042147	AGG	MLANGTIRTIEDEKDIYISLTQLCEYFTQSVVNMQKEIEEADPKNKRYAAGLLDMMHTIADEMVQLGKFEAQRRLIDSPEDLLKMIDKNPFGIVE
Ga0209085_100002944	F071905	N/A	MKLYDSKDWCYKRYVIEKKSILDMAMEAKCSHMTIQRSLQRWGLIKQQRKWTK
Ga0209085_100002948	F028168	AGGA	MTDKSTIDIINEITEFNDMKEFMGDSDLDYALDLIIKLIAKPDVPSSKAPDLIIKMQALSAKFAMLSRFYTTFEKGGENAKKKNVYYTAEEAINKLVDALKYSARYGA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209085_1000029

Overview

Ecosystem & Geography

Associated Families

Sequences