Scaffold Ga0209085

Basic Information
Taxon OID	3300027741 Open in IMG/M
Scaffold ID	Ga0209085_1000162 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027741 Open in IMG/M

Scaffold ID

Ga0209085_1000162 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	52853
Total Scaffold Genes	81 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (32.10%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

52853

Total Scaffold Genes

81 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (32.10%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F038058	Metagenome	166	Y
F039455	Metagenome	163	Y
F048735	Metagenome	147	N
F055388	Metagenome / Metatranscriptome	138	N
F072994	Metagenome / Metatranscriptome	120	Y
F089761	Metagenome	108	Y
F091224	Metagenome	107	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100016222	F089761	N/A	MALRYPESEFTSPSIMLLRSLTTELGEKATKEPGGYGGMKMERKKLTKILKDHIEDPRLSDWDRDMIRGLE
Ga0209085_10001624	F055388	GAG	MVARSLTNQNRVLEGATFSWHIILKNKQTNYMAQNGVTFSSCQDVDSLFREARTYYNPFFIKKMAINSIYYGRLETETWPLNTLPTMKAFRFGRGWYNPDQPWQEVQSGRCIQNADEVQFEKIAHPGTESYSFSLFTKAMRTDWYQLTDFMYRLFPQEEMDHIMGTNVNITKNVHEEFARSNWIGGSGHKWIPISNGQSLISCATPDDQMFIVQPFEGTNEGSFNMGYVYVKLPVSQLNNIGLLSLDTLDDILVNLQREDDAYRLDVSEAAGRPLLEIIVPDARVLRQLWQYAKQSGGYWESVSDFDDKQLQYSLGIDRVIGNYAFCNDINGVRLNVDWVYNASLPTFNANDPTTWPRLVRVLPYIPVSTELGCKYIQNQAFQYADFGITNPWVNKAMIKWISPSQSGIGEAQGMTQNYAGDWEWKNPDWECNIKRDQGFFWNQFRMGMQFQDPTLMHSILHRLNNVQLVIPAACNLVPNYTPQYTPDCFVCSSVVTEPI
Ga0209085_100016250	F091224	N/A	MRSSIDNILNEIGLDTPDLAPMNRKEAIEMGLVKLIEKPKKCACGKSAYTSKSKCDSAIKHRLSAGFGGMGMLRAYECDIVRGNFHMSSVCVKYKR
Ga0209085_100016254	F039455	GAG	MARVHVNTGRYGDIICFLPVLLNEYKETGVKARLVISKDYASILDGVSYVEPLVFDGRFEDVSGAIAFAKTFSDDVRTSQVVGISDVIVSQVYGNSHAPKIICDSFQKDAWKLADKLELWPSQPQLVFDKRDKKREKRLYKYIPTLKPWIVVSTGGISSPFPYSDLLWEILNHSLKEFHIVDLAKIKAERMYDLLGIMDHPNTAAMILTDSGNLHLSYATKKPVHALVADSPTLWHGAAWRPSYASYTRYKNFPRDVTRILDLIRNPPAKPKHPDIVHVYSRLPNAAGEEKRRNDLAASTWNVGWVDCGLDDNCFVRHSANSIPNQKKEIPMIKEMIKFACCGRKDTDIVVITNTDICVTTDIIEKIRKAPLGYAFRHDYKYLDKIIPDDQIAGDKYPGCDLFTIPVGWWRRNHHLYPDMVIGRHSWDRIMRELIKLAKGQEIEKAIYHQRHDSMWEQTEHINSDLCNLRNGRLAREWLLERKMPLEELEFLNYEGKFKKPVRKR
Ga0209085_100016262	F038058	N/A	MASHGIQYTVDKTEKGIVSDRAMPQPMQKLQIKGDIAAIRAFKDARTARIKSIGEANDKCLSVGGPANEASMGKGSSFNSDWL
Ga0209085_100016278	F072994	N/A	MITLSSPITITPAPVNGKAIKPITLTNIDYSIIYDNTQQQAIARIKGVNVNLVLWDQSTTPPYSSIGQFTDSDTDKRVSELLGSDIAAGILSLFPFGKVKKP
Ga0209085_10001629	F048735	N/A	MEYNGFNLRPPEDTTYGLSFLETSPQFMRELIAYRLTRGEFGRRERIKMGIKLENTTLKNPAQHMINCFQLIFEDDVLLHSQGIVNNYAVDIVDLFCNENDWGIAGCASSGKTFSVAACIVIDWLCAPNCTSTYVASTSLDASEDRLWGKVCTLYRVAMRNLQSKYGKDSSIGNLVEYRRMIVFESIDTKDSERDYTNAIKALAFPRGGEGKRSVENTRGRKNARMRLFLDELAEMDLYALDTRVNLGANPDFIFGGMANPSNTANNPHTELCQPDDPMEWDAVTRYTHKWTTRTGVALHLSGEDSPNFKVPDAIIPPFDRFLTIEGEAATLKRCYGNKNALEYWRNVYGWWPDSSVELTIFSKQFIQACDIAWEPTWSDRTRVVCGFDPAFTAGGDRCAATFCRYGPNDTGRRVGFYLGTKEYSSSVGDVFEESIAMQLVKDCLEYGVHPRDFGLDISGDGGKMLRAIIIEWGKFHPEAMFIHPISSMGMPTDRKISSLDKRTAKEAYDRRVTESWFQVHTAMSTKSLVGIDVEKHSSIVNELCSRLYFHKGRKVAVEKKLDMKKRIKKSPDLADSLTYAVEMLSKAGLEFTFEDDAKESLDILEIRDWEDRLIHSKNNSQEEVDNDDWGYGSSSVDPDGF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209085_1000162

Overview

Ecosystem & Geography

Associated Families

Sequences