Scaffold Ga0209085_1001215

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209085_1001215

Scaffold Ga0209085_1001215

Overview

Basic Information
Taxon OID	3300027741 Open in IMG/M
Scaffold ID	Ga0209085_1001215 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	16402
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (74.19%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009268	Metagenome / Metatranscriptome	320	Y
F021754	Metagenome / Metatranscriptome	217	Y
F044297	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_10012153	F044297	GAG	MGKMNTISLRLEELRENLYNFGIHSEIVMQECKLLCELGFVDEVNCIIWEFENFLVTNEG
Ga0209085_100121530	F021754	AGGA	MANKDYSNFQVQKEILMEYLQVMISMQDWHGVADVAMDLRELEAKNNNNYKSK
Ga0209085_10012159	F009268	GGAG	MKKWMEKEFGQVVYYDDIDGKIVGAVYKIGNQNSIWGAKIYTEIEGILGQYVDSDYARKAVEYYWEVQDRTLLGHYNV

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