NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1002801

Scaffold Ga0209085_1002801


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1002801 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9729
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001059Metagenome / Metatranscriptome790Y
F001915Metagenome / Metatranscriptome617Y
F003521Metagenome / Metatranscriptome481Y
F004695Metagenome427Y
F103134Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209085_100280112F004695AGGAMLDKQNLIVESLESPPGNKGIEYQVAHEAYLKMVDYLRLTQAKNTLNRLSDYHYLNIAVSNSTEPVRGIDYISPVVSPGIDYSTAVITKCLMPDGKINFEFERFSEADAAGARQAAKMALHFLNSKNDSYQFVRDWAQDSLLHKCGVVMASPVREQITQYKEVEGTRDNLRSFEIMAAEKGLTAKRQQMRRIDVDLQGVAQETMMPDETGQPTEPTTDEVQDAIKAHTIYRAKYKLTGYSTNIQIKHVAQHYFVCNPTIPGIRRQDFCGFYEPMTIHEAKSQYPYIDLEKFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVVMLTTAWLKRDIDNDGDEETIEICYSGSYILYVKEVDFIPLAVMCPKPIVGNFFGYSQAERLVPLQEYKTAINRAEIAFAMQASTPRIGVNPEFIDAEEIQRGVSALFVLDRKFDPTKHIYEFQAMEGNLAYVQDAMQRFDQDTSRMLGMTNPADTLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAVGLKDLIYIVWKTMIQYSDDYNMQQLAEAMSPGTGFLDAKSMENFDFIDRNMINIDLALGFLSDENRLTRQQLIAQAQAQFAQLVAQLDPSVPELFAKARRPFEDTLYTLGVKNCDSYLPTLEEAAKVMQAKSQKGPSPEQQEIQSKVGLNAAKTKESETIAALNIKKAEDIDTDNMFEMMAAKRGKLSAVEID
Ga0209085_100280113F003521AGGAMKSLVKNVREYFNRRTKATDAYKEANVEKRTLVIQNGEVASRLMLNTDFALMFNLYRFNMLERLEEARTDEERIGNAYYVAGVRDFIDFVEKTEYLARVASKKAEL
Ga0209085_10028013F001915AGGAMEWSLAHPLHDVEDIVEMADSFFGHEADGIVTRSRDVFRHRVTVACTEQVFNKSRELIAVCRENPLVELDEGHPDQPKLMGFCWFDRGGYTTYSNEEISNAKFHHLDLSLPVRTRVLLINQMIDQHILWANKYGVPIVCSTSIRAEHDGFMKIHAKRGFAVNGSYAWIRTEKGMECLTKK
Ga0209085_10028017F103134GAGGMYGRVISGGKQMSKGLTKGINDKLAGFEEENERRAVIATAVKNAFTVRHLSDQTTNNSNNGKFQTVKEKAKVNP
Ga0209085_10028019F001059AGGAMATYDIEALKADLPTAKDLAQFVYDKTQIALDLVGKPKEDQYQVAKNALEGKKIPIEFITAENPYVDKKDLIPVDELKVLPERNKELPDAGSQVHYFGATNMPHPLDPQSDKKVAIDFRKYENGLITYQVVAPVEQIAVGSRINKYGQTVPEKYTWLDPRTEELIMRRPDGTFTERGRGLHTYLIGEKGGGVWTLIDRDMVSVSAKNIADPWA

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