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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027741 Open in IMG/M |
| Scaffold ID | Ga0209085_1004769 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7230 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (92.31%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Croche, Canada | |||||||
| Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001059 | Metagenome / Metatranscriptome | 790 | Y |
| F001915 | Metagenome / Metatranscriptome | 617 | Y |
| F003521 | Metagenome / Metatranscriptome | 481 | Y |
| F004695 | Metagenome | 427 | Y |
| F015330 | Metagenome / Metatranscriptome | 255 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209085_100476912 | F004695 | AGGA | MLDKQNIIVESLESPPANKGLEYQVAHEAYLKMVDYLRLTQAKNTLNRLSDYHYLNIPVSNSTEPIRGIDYISPVVSPGIDYSTDVITKCLMPDGKVNFEFERLSEFDAIASQQAEKMVTYFINSKNDSYQIVRDWAQDSLLHKNGVVMISPIREPITQYKEVEGTRDNLRSFEIMAAEKGLVAKRQQMRRIDVDLQGVAQETMMPDETGQPTEPTTDEMQDAIKAHTIYRAKYKLTGFSTNIRIKHVAQHYFVCNPTIPGIQNQDFCGFYMPMTIHEAKSQYPYIDLEKFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVVMLTTAWLRKDVDNDGEEEIVEVCYSGSYVLYIKEVDFIPMASMCPKPIVGNFFGYSQAERLVPLQEYKTAINRAEIAFALQASTPRMGVNPEYIDAEEIQRGVSALFILDRKFDPAKHVFEFAPLQGNLGYIQDAMQRFESDNNRMLGMTSAADTLNPEVMKDGNSGYKLQLAMGPNQIIQDAMVKNCAIGLRDMIYIVWKTMIQYADDYNIQQLADAMSSGQPFLDAKAMENFDFIDRKMINIDLALGFLSDENRITRQQLIMQAQQQFAQAMLQLDPSVPELFAKLRRPFEDTLYALGVKNCDAYLPTLEEATKIAQAKAQQGPSPEQQEIQTKVEMNKAKAGETAMNTQLIKKKIDDIDVDNFYTGMAAKKGKLSAVEMD |
| Ga0209085_100476913 | F003521 | GGA | MKSLVKNIREYFNRRTKATDAYKEANLEKRTLVIQNGEVASRLMLNTDFALMFNLYRFGMLERLEEAKTDEERIGNAYYVAGVRDFID |
| Ga0209085_10047693 | F001915 | AGGA | MEWSLADPRFDVDDIVEMADSFFGHEADGIVTRSRAVFRHRVTVACTEQLFNKSREFIAVCRDTPLVQLDGDDQPRLLGFCWFDRGGYTTYSNEEISNAKFHHLDLSLPVRNRVRLINEMIDQHILWAHTWGVPIVCSTSIRAEHDGFMRIHAKRGFTVNGSYAWIRTEKGMECLTKK |
| Ga0209085_10047694 | F015330 | AGGA | MSDEKVVELKTKNPVGRPKSIVNRVTEYGALFNQLNAAHIAKGLPPLKTAMEVLIEAMQSDELDIKDKARIADKLAPFESSRAPVISIEHVQNIVREEEVSADDAMDDFLDSLRKV |
| Ga0209085_10047699 | F001059 | AGGA | MATYDIEALKADLPTAKDLAQFVYDKTQIALDLVGKSKDDQYQVAKNALEGKKVPAEFLTEENPYVDKKDLIPVDELKIIPPRSKDLPPEDTQVHYFGATNMPHPLDPQSDKKVAIDFRKYENGLITYQVVAPVEQIAVGSRINKYGQTVPEKYTWLDPRTEELIMRRPDGTFTERGRGLHTYLIGEKGGGVWSLIDRDMVSVSAKNIADPWA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |