NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1010802

Scaffold Ga0209085_1010802


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1010802 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4578
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025215Metagenome202Y
F046858Metagenome / Metatranscriptome150Y
F073073Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0209085_10108021F046858AGGMYIEITDTIAIIIALTTSTTLVITTAIKNAKLARALRELSVQK
Ga0209085_10108025F025215N/AVSENQTHERIDMKLKVHHPSGDVIAEVYDFAAGALLMSLYGEGSHISYRGKALWREGIDGEGAESYDTTSMTIDSRLIEMGVQVDG
Ga0209085_10108026F073073GGAMISSDEKMSTGFSKSIILNDGTNQYSGRLHWDSHDGYSMAWDTSAPPEADRPEFEYVLDCITDLEK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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