NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209085_1017788

Scaffold Ga0209085_1017788


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1017788 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3453
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001937Metagenome / Metatranscriptome614Y
F075840Metagenome / Metatranscriptome118Y
F095129Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0209085_10177885F001937N/AMNSDVATIVYSYFFVTAAVLAGIGVIAKHTIRTHTDELKDQLSKITYALYNEGQTGLINKVDQLIENQNLIRIDVEVMKAKAESKPRARAK
Ga0209085_10177887F075840N/AMWGKWFVGNAMTAVVIIGKSPLDFSSHDWKQAANTIWLSIVPVVVAWANPKHDLTMTKLK
Ga0209085_10177888F095129AGGLTIQGLTLNPESKQAAALLAEKTFERYRNNPGHYRNTANSHLVGHLGEFAAFIWLRDNGFEPEAAFSDPDKDKEADISTNVGRIEVKTWSERYWEQWGRCVSVSQYASIKRKADFIFWLSVDEVDSETPKVAFRGWCEVGIFEGMSPIMTGDPGREVRNYQLHPSQLKPVEEMEKLHGSRRDLERGNSPDNGR

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.