NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1075037

Scaffold Ga0209085_1075037


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1075037 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1526
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006266Metagenome / Metatranscriptome377Y
F016785Metagenome / Metatranscriptome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0209085_10750371F016785AGGAMLDKQNIVVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEMDGEQAAQATEMVKYMVNSKNDSYAIIRDWAQDSLLHKNGIVMVSPVREPITQYKEVEGTKDQLRVFETMAAEKGLTVKRQNMRRIDVDLQGVMQEMMAPEEDQTPQEGMDSAIRANTVYRAKYKMTGFSTSVKIKHVAQHYFVCNPTIPNIQDQDFVGFYDPMTIHECKSQFPYVDLEKLAEHAAYGPAG
Ga0209085_10750372F006266N/AKSTDIDLRNNSKMERLISFDLGIKNDPTVISFFFRDPVEEIIYLHRQVKVAQGETPDEYVHYLMDKESKGVPIALPHDAAQAGRYTLTEQSVREVFEDNYGLNCIAGAILNPVNDMGKVTNHKSYGINIMRMGMERGTFMINEACVDFLDEARNYAIDDAGKFSDPDDHIDSARIGILALIQGHGESLVSRANTFEFRRLTAVEGKAQRI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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