NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209908_10000117

Scaffold Ga0209908_10000117


Overview

Basic Information
Taxon OID3300027745 Open in IMG/M
Scaffold IDGa0209908_10000117 Open in IMG/M
Source Dataset NameThawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5254
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost → Thawing Permafrost Microbial Communities From The Arctic, Studying Carbon Transformations

Source Dataset Sampling Location
Location NameSweden: Kiruna
CoordinatesLat. (o)68.3534Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026629Metagenome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0209908_100001174F026629N/AMKILLIHSEDDPEIGPCASMPWDRIVDLGMGGKNTYARWTRQFRCPVTILDSLRNGFDDFRRVREVLGVGCGRLIDEHGLDWWEIMSILLHGELETLILLQRFVRTVEAGDEVYVSRPGLHASLLQCLRAGRVNAFPLRRGAEKGGLAHYVRVSNKLSVPQMIDVFWDKYDAGYQFRGRLARKRPSSARPVVLLPSAYVNVSRTGIAYANTFPEEDFLLVTTRRSGWVQDPPKNVAAAWLSSYASVRDRSSENAEMESRWRSLRKELAEVPEFEILNRLGYLDSFPRRFRRGLEVRDAWRNVLDTEPVQAVLCADDSNPYTRIPLFLARARGLVNIACHHGALDGRYLFKRSYGDVIWAKGKMEEDYLVRRCGVPQEKVEIGAPTLPANWNGFEQSNRLTFRPYLLFISEAYDVGSGRPEEFYRDVLPPLAGLALATGRELIVKLHPAESERERTSMLARILSAEQKGVTRIVSGPLTEDLLAKAWFGITILSTVATECAIRGIPCFLCKWLEFWPYGYIEQFIRFGVGVDLNDPSEIGKIPQYLQQRAVNTDMRENCWQPVAAGRLRELLTTSREAYTTAMRLN
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