Scaffold Ga0209597

Basic Information
Taxon OID	3300027746 Open in IMG/M
Scaffold ID	Ga0209597_1000063 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027746 Open in IMG/M

Scaffold ID

Ga0209597_1000063 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	63869
Total Scaffold Genes	77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (35.06%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

63869

Total Scaffold Genes

77 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (35.06%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031100	Metagenome / Metatranscriptome	183	Y
F038243	Metagenome	166	Y
F042335	Metagenome	158	N
F068824	Metagenome / Metatranscriptome	124	N
F080908	Metagenome	114	N
F081331	Metagenome	114	N
F084229	Metagenome / Metatranscriptome	112	N
F097332	Metagenome	104	N
F099280	Metagenome / Metatranscriptome	103	N
F100402	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_100006322	F031100	N/A	MDDIPSILDTAKFRHLVLDGVSNIANSIQGFQIPEYDELALTYYGSTNNIATVAYSKASVVVATLTLTYSVQPPTANDANLVMVSIA
Ga0209597_100006327	F042335	AGGA	MNDNATNHGLMGTIISTTGFIVSMLPEIEASIRLTGGIISIIAGVLTCIYMVKQISK
Ga0209597_100006338	F099280	GAGG	MAKPTTEAAMPEPAMGMDLPEDMSGIPSPMAEEGSVNISVSKSKFDELHSIAMQLAGAIDALAAEVEGQKAATESLDGQVPAAEGAAMASEEDFLNSIASEGSMR
Ga0209597_100006342	F038243	N/A	MKPKMQYKLVPKGTNEFLELVDFAEEFDHKIIEHPNINVYAHYRDGELYGYSDHVFLPTIYPAFHPKFTRPRDVIQCMNDWITYSQITNSPGYIGVPLKDERINFTNEIMEKLGLTPLKREIYSITT
Ga0209597_100006354	F100402	N/A	MATKRNNHPAFPVPHFGGDAKTGAVKPNSGMGMRDYFAGAALRGYRASEEFSGELPEIVAELSFVDADAMLIEREKQSFNQ
Ga0209597_10000636	F084229	GGA	MNEPNIAQKAVTFVKSAAAFVRAGMPIRNKEQIEERLLICNQCVHYDPTAFSGAGKCGVCGCNMEIKLVMDTERCPLEHWE
Ga0209597_100006361	F081331	AGAAGG	MKELNFDTLTGNGWIQFKDFLAQSDIAFYKTFAGHEECRCNEGKKKQVEVYVYDHRKYSAVAGVGYEVKCTGELPDGTWIELKAHGLKQDHVDPKAQELLSIWDWSVKNNLTKSKI
Ga0209597_10000637	F097332	GGAG	MTRLEAQRKSNEDYMCGRISKEEWDFQFEELGNVRVWSKDGKIHQLKEEHERLRPDNRTT
Ga0209597_100006370	F080908	GGAGG	MSETPYTSEVERLKECDKDYRSIAAQLSVFCSAAIFALREANKDLEDAQVKCEIIPDPFAAQAIDDMFAQYLESLRDYPEIMAIALKFIQQSR
Ga0209597_100006372	F068824	N/A	MNWTTEQLKEKGYTLAPDGHYYYADNYKPPSRRLLDTLVKHAPKRSLDKVRKAKETSKDCTAKCNPKYTLAITRFSTKTLDVDNLAGGCKPLIDQIRYSKLIPDDNPESVEITFSQVKVKTQAEQRTEVRITKA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209597_1000063

Overview

Ecosystem & Geography

Associated Families

Sequences