Scaffold Ga0209597

Basic Information
Taxon OID	3300027746 Open in IMG/M
Scaffold ID	Ga0209597_1000188 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027746 Open in IMG/M

Scaffold ID

Ga0209597_1000188 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	41258
Total Scaffold Genes	71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	48 (67.61%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (50.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

41258

Total Scaffold Genes

71 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

48 (67.61%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004517	Metagenome / Metatranscriptome	434	Y
F006255	Metagenome	377	Y
F012854	Metagenome / Metatranscriptome	276	Y
F016143	Metagenome	249	Y
F017107	Metagenome	242	Y
F017287	Metagenome	241	Y
F021938	Metagenome / Metatranscriptome	216	Y
F027399	Metagenome	194	Y
F041636	Metagenome	159	Y
F046243	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_100018814	F021938	AGGAG	MLCPKCGWTEGNHIEAQKTDQEFFLEWWTPTIGEEAAKASWQDKVAMKTRVAPTVMSDIPGHISMADGTWVDSRSKHRENLKRNGCIELGNDVPMQQKAPEMSRQSQEARKRQIAELAYAKLR
Ga0209597_100018827	F012854	GGAG	MIDLFQALIKLYPQIVTLTGDVATDANGNEVAYDLAAVTTQAQADAQTVIDTKASALAKLAALGLTEDEIKALL
Ga0209597_100018828	F027399	N/A	MNFTFTWILDKFGFQPKIEITPKPVVKKPAAKKPAAKKTVRKKS
Ga0209597_100018829	F041636	N/A	MATLTEKEIEDIVEKVTKRVIENVYTSVGKSVVTKFFWFVGIAAVGLVTYLAGVGHIKVG
Ga0209597_100018833	F016143	GGAG	MDNDYIYTPVGTDITVRWKLAGWVAPSEQQEYLNKWKYYQELPLRKLDDNARKEYEMVMKKAKVMRIR
Ga0209597_100018838	F017287	N/A	MDIRRVFEGEAPCDKCDQAQDCKEYEWACRAFSFYVLHGRFEEYTVRHPTRGMFNKIFKEDDKALKNYLKSVKSKEEMGIHDLFEE
Ga0209597_100018845	F006255	GGA	MGELNQLMLEHEEFLESSLDDMEYGGELTQEQVDCIRQACGKPKSKPNALLTEMFTDFGNIFGGNHA
Ga0209597_10001885	F004517	AGGA	MEHMNHKYPKGNALLREHKQSTLEKNQQQRLDRRKLIANKLKDLDKEVK
Ga0209597_100018851	F017107	N/A	MNDYSENYLRIQKLLKCYHNATLKNQYEKATRIAHDLADETIKLEFATYEQIRKQWLS
Ga0209597_100018861	F046243	N/A	MLRPHKESTLEKQQKKRQDHNPPLELDDSGILNKKANQRMKRKEALSKAMNKYHDPDIVG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209597_1000188

Overview

Ecosystem & Geography

Associated Families

Sequences