Scaffold Ga0209597_1002223

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209597_1002223

Scaffold Ga0209597_1002223

Overview

Basic Information
Taxon OID	3300027746 Open in IMG/M
Scaffold ID	Ga0209597_1002223 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12405
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (91.30%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004762	Metagenome / Metatranscriptome	424	Y
F017130	Metagenome / Metatranscriptome	242	Y
F034923	Metagenome	173	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_100222310	F004762	GGAG	MATGAEVLTMLIPTGGWVISGDDFEKIQFIEATPITKAQFEAGFAQYDVFKAEQDAKAGTDKAAAQAKLAALGLTADDLKALGL
Ga0209597_100222315	F034923	AGG	MTNNEKLLIICLIGATISFIVMAVSAYKEAYDRGHRDGWHKGRAVNRADFWQE
Ga0209597_100222318	F017130	GGA	MGTPESEGIMGYAELHTVDGWVNVEDIPMIDTVICQLCNEPTEAKDITITARIEEGVVVAGTWSCNKCKAVNG

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