NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209597_1003046

Scaffold Ga0209597_1003046


Overview

Basic Information
Taxon OID3300027746 Open in IMG/M
Scaffold IDGa0209597_1003046 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10461
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001259Metagenome / Metatranscriptome735Y
F006135Metagenome / Metatranscriptome380N
F088293Metagenome109Y
F091372Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209597_100304614F091372N/AMTIKYDLNRTKLLNEAPRLIQWAIAKGLMSYPITTKYHEDGSINPDIEEEIHVNPDQYTPEFCMRAHELRQLGLTLDDTAKVIGVSRGSITYILAKGHEHQLEKERANLK
Ga0209597_10030463F088293AGGAGGVSVEQRILDLPAFADYNDRRQLRAIAMDVRKMEDRINQLETENDAMRADLLLWNEKEVKL
Ga0209597_10030465F001259AGGAGGVKDSPAFIYVHAWNGTIRVESLDTARNIDGNPEWKHVSTVNAQVILENILRAKGKERNKIIKHLLA
Ga0209597_10030466F006135N/AMSVRIKIENQTEVPVLVALFEQPKCNDHPTRSAVLKPGESCDWGSGSVPLGNYQCYAAMSGDASSHDEWVWHFPGIAEVVAPLELGFKLWHAGDIDWANVKAMSSDDLNATFGSAYTSAKSSTKSWNGMSSCIFHIRGGPSWVEETEQVGIFRPKTIAYSGVQSTPMKSE
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