NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209689_1010958

Scaffold Ga0209689_1010958


Overview

Basic Information
Taxon OID3300027748 Open in IMG/M
Scaffold IDGa0209689_1010958 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5989
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013075Metagenome274Y
F026836Metagenome / Metatranscriptome196Y
F037660Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0209689_10109582F037660GGAGLAEASGAKKRTGPRATALVAGLIAGVVAGFIAYLVAGPVGFIVAFIMGAITGSRATLLFSRAGEQT
Ga0209689_10109583F026836GAGLMQKTRSVGRLILGIFSIALGIVSLVAFFSITYIAGVGFLGGFYGFILIVLGVGLILPKKEHDTAEIR
Ga0209689_10109588F013075GGAGLSREFLPRAHSRRLGELDASNWKNLEAGRNASRVDPAIREIVSSLNRKGYRTFSSCSGGHRANLRRRFDRHESGYIAFSPPSRIPFTLYLALRGRNHDFMFEAEAVIHDGNGDRRETVYTQLDWQLVDQNTHRREYYEKLFIEMKRIIERFPGQPADQREFLTGLLGKPRLRLGSRIVSGQMKRFTR
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