NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209689_1019996

Scaffold Ga0209689_1019996


Overview

Basic Information
Taxon OID3300027748 Open in IMG/M
Scaffold IDGa0209689_1019996 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4162
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015710Metagenome / Metatranscriptome252N
F024389Metagenome206Y
F035691Metagenome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0209689_10199962F024389GGAMKKRKFLYFVVVLATVIVAAILGYIYYEYIPRVLVDDTQTLKENHIWQFDLFVLGNRNVNITVSTAQYLVYVTFWYQQNSAATTYLINKPVTNTTQASFPVSVQQSGTYYLNVQKTEQYGEKVTTVVHVEVTS
Ga0209689_10199963F035691GAGGLVELWKLNNIFKLFLLSFTAVFLFLIFTLNVIQVSQYLLIVLAAGTVVYLVISFRVIPGAQGPSTIPQHIHLPSRTHLLAIILIFSLFASSYVVARTLTTPSPFQLVKFQYLVLPNGEVLSMSPLQPSNECAWLESMDVTTQQRARQLGLPDCDYVAWYHRTSPPTLFLEFQNFTELTYNLSNTTARSTGSELLCFSLSLQSFQCWVPPASVSHLK
Ga0209689_10199964F015710GGALDNTSSSRSGADSTVRFYVVLSVVFFVLAIISLSILTLYLIPDFIVLALGAMDIATILNAVSRMIYLRTIPDPNERRAKAASTVKFFHIVSYACFGIAAIVFAIALNDLATDFGVMGLELTGCGTILRAVSRDIQLEGV
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