NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209689_1041980

Scaffold Ga0209689_1041980


Overview

Basic Information
Taxon OID3300027748 Open in IMG/M
Scaffold IDGa0209689_1041980 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2624
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000921Metagenome / Metatranscriptome833Y
F099071Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209689_10419801F000921N/APNKRLKLAGGDRSKGSGLLCPWRARTVVHFPCAGGRVARSLSAIR
Ga0209689_10419805F000921GAGGVAFTEWAPNKRLKLTGGGRFKGSGVLCPWRGTDYVPRPCADGRVARSLSAIR
Ga0209689_10419806F099071AGGGGGMIGTLLATVLASTPVLSDTMVRLGIVERDLTGDNVPEILSLTGRGQTVDSLEVTFTITSSGRTVFETKWSDTRAVGFDAGRRVLSAAEHRRRLRELGRFFFADEKFISPAEFLIRLRGSAPRHIDLIPDVIARDLHPSDRSRAQLIWDEMQAAGITLFEFSVGGDAVTTIGWS
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