NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209689_1103155

Scaffold Ga0209689_1103155


Overview

Basic Information
Taxon OID3300027748 Open in IMG/M
Scaffold IDGa0209689_1103155 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1467
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031810Metagenome / Metatranscriptome181N
F056503Metagenome / Metatranscriptome137Y
F061195Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0209689_11031551F061195N/AIERWDGHAAERIARVVCDDECFDPNEGTALPPAPRRAVAMPQPLGAG
Ga0209689_11031552F031810AGGAGGMMREHRSLIVWPSVIAAGLLAAACTDQPKVSMAPNRPNFWVTPPPAECVTGKWTGGGRIDPTGNRAASNYDNVDEPAGGQPAAPDPTPYMTGKVTFGFNVFLGQDANGNCIVKKGEIEVNGHALKIAWHVSIHDGVDAFDGRPVFANEFSDGHPGGVCVVVGVPDNYMTAREKGKGATEPSELTQFEVCDNDRGGRQNTRSDAMRWRSEHHGDTGLTYLKGGNVVEHGS
Ga0209689_11031553F056503AGGAGMNGKTMHWVNRLAVLGLVVGLVAGFAAVGSAQSVGGQAYSTYVNTPLGSSGQ
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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