NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209084_1000049

Scaffold Ga0209084_1000049


Overview

Basic Information
Taxon OID3300027749 Open in IMG/M
Scaffold IDGa0209084_1000049 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)113987
Total Scaffold Genes183 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)144 (78.69%)
Novel Protein Genes27 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)24 (88.89%)
Associated Families27

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000311Metagenome / Metatranscriptome1326Y
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F000447Metagenome / Metatranscriptome1128Y
F000671Metagenome / Metatranscriptome945Y
F000852Metagenome / Metatranscriptome860Y
F000868Metagenome / Metatranscriptome853Y
F001043Metagenome / Metatranscriptome794Y
F001106Metagenome / Metatranscriptome776Y
F001125Metagenome / Metatranscriptome769Y
F001562Metagenome / Metatranscriptome670Y
F002489Metagenome / Metatranscriptome554Y
F002935Metagenome519Y
F004051Metagenome / Metatranscriptome455Y
F005741Metagenome / Metatranscriptome391Y
F008245Metagenome / Metatranscriptome336N
F008814Metagenome / Metatranscriptome327Y
F011299Metagenome / Metatranscriptome292Y
F011394Metagenome / Metatranscriptome291Y
F014140Metagenome / Metatranscriptome265Y
F026561Metagenome / Metatranscriptome197Y
F038241Metagenome / Metatranscriptome166Y
F051930Metagenome / Metatranscriptome143Y
F066776Metagenome / Metatranscriptome126Y
F076101Metagenome / Metatranscriptome118Y
F103268Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209084_1000049102F001106AGGAGMSFDTLKVAELKKIAEDFAVDTDSLKNKKDIIAALAEEGVTYSIYEKTLKDIEDATEEIEILPTKFDISSVPEDTVLVRMTRDNFRYDIMGQTFTKEHPFVAMSEEDAQKIFDSEEGFRLATPKEVQDFYN
Ga0209084_1000049132F051930AGGAGMRIQYVSTYISMSKDGLVHGFLCPMDQSFLFCNQDLKDNIYLYCLDCNYKNYIGINTYQNIVKEVESNGKNNKM
Ga0209084_1000049134F002489GAGGMQEDQNNENSSNLEENLPMVTYIMLHRIYDLLTLISNKVVGGDDTAKMVEYHNQGYLLGPSPSYTPKDENE
Ga0209084_1000049147F000447GAGGMGYVQLFRMDNEGAGWVDLADATPDELFQIEIGLLNEGAL
Ga0209084_1000049151F001562AGGAGMKSQFELDLEIKESFIDLLNDVYPVVKIGYSTFTPAEILECCDPIAFAIGLVEHEDYLAELEE
Ga0209084_1000049155F076101GGAMYKITLAYDENAPHWQQDYANEFDAWKDFFAFVDWGFADKFSTVNIYTPALKCYTKIFYREERKVVTVK
Ga0209084_1000049156F011299AGGMTMTRKHFEQIAEILKYNSNKTHPAVFSKMVLDFAEMCANENPNFNVNKFHEASGYHVPKFTSR
Ga0209084_100004916F026561AGTAGMSINIRKDDGTGMTPPPNDSPSGSVTSRTTINRNPRQGLKVDRNRHGIRRETNTTPQPPKKTRPKKV
Ga0209084_1000049163F004051AGGAMTVNGYTYKVGDLFTTLKSKKTGVIKEIIPNASGSVRVLLEMPTKETRWTTVSDSALTNA
Ga0209084_1000049165F005741AGGMARFRIEIYDANKLNDVTIYSEQGVDKEYLTELVFSNLQKFSGRVNAYVFDNQKKKKTTALFLDEAIVTKAKSYSTGLTAKELGLS
Ga0209084_1000049168F002935GAGGMSDRTKGYTGTLVDGKKLAVIANGIYNLQYSSDFSECTVDSLLFIELEEKNVFGDSKYALVCSEGVGWEQDTYGCLEVPTNIGAMGLWNGRVFISVDTVKSCLTDRTEDISDYIRVFGSRLDSNCSLWQSKMSVAPATILA
Ga0209084_1000049170F000311GGAGMYFELQARTQAALHGAVWEASIMGLDPEMNSEPLTFNIGTGSIEKVSNLRDKYGLTEVYVSEFEPYHPYGE
Ga0209084_1000049171F001043GGAGMSDYKDGWNDGYKFAREEIMEKLSEIDIKDIDTWILDRLSEMIEGGAL
Ga0209084_1000049173F001125AGGCGGMGDRANFGFKLDNENIIFLYGHWAGYNMLAQLANAVEKARPRWTDDSYATRIATSQLINTDWESETGWGMHVNEIGDNEHKVPVIDWKNKTFSLYEEDLETLVFTLSLEDFVAKYSLVLV
Ga0209084_1000049175F000868AGGTGGMSFLENENQMVIDATYSEIGEMLVEDWVNANLDEGQLYADFRFAEMSDSNYLKGRFNQFYNLNVGDQYYIEWNEEA
Ga0209084_1000049176F038241GAGGMLGYTKEDIDQMSNAIHDAKLFYIMKSDVEQVDKDPLVEGLLKANDFLQGLWAEGYFD
Ga0209084_1000049179F000263AGGMNNEDIGLPPHLQRMVNAGVSGLDILHGELKNLMLVAEQELADAIEREEESEEAMDSMVRTEAEGMLDALTLVYQLTYDLSFAIGARE
Ga0209084_1000049182F000852GGAMTTKREYLKQKGITVGARGRFSGAAKVALAEAEKAGIKFAAETKSTK
Ga0209084_100004926F008814N/AMTVLEGIVKDIGEELYQKWYNGLAVEDRTEEASKAMASNAGETALWVIQEFMNRFNNAAEELKDK
Ga0209084_100004932F000671GGAGGMEKVLCYCCNKSKFKLNAKRSVLLPINLLMCETCINNKLEPRWVIILAGRQFGADVVKEHVLKKKYVGETISASELLV
Ga0209084_100004935F011394AGGMEFINKDKDHFKYGINQWTGEPNKPVFYNKEMALKIRELIKPAKDLRMDIAKYPDFLAIRLYEDNFTQYDGSMKMRVIDYVEMVKKIIESYGVRCELEGVPGARKL
Ga0209084_100004937F066776GGAMLHLNLKGVEVFIDKFKKDNQISFWNNYDLVIWKKDIGGFTDIKGMYLNNTWGKAEKISVTNEGIWKLPKRYVKYFK
Ga0209084_100004938F014140N/AMNNYSVKLNVELEISAFNLEDASEYVHDIFNIDDEIKKVSIVKIQENK
Ga0209084_100004953F000376GGAMSEYQELAKQCKCCSKHVPLPTSMKMYEEIILCPTTFSNVVEYKRIWLSYGSRPMGSIRKHFSEYVQQIVESTIDKNNINTIELSSKQQ
Ga0209084_100004955F000369N/AMSELEPAVHFDRMNKVVEELLKGNSATQIATITGFSRKEVVEFIDEWKTVVHNDSNIRDRAREAISGADQHYAMLIKEAWKTVEDADQSGQLNIKANALKLISDIETKRIGMLQSVGILENNELASQIADTERKQDILVGILKEVTASCPKCKMEVAKRLSQITGIVEPIVIESQNVV
Ga0209084_100004963F008245GAGMAEDKNTLQLIGDITEFNDLHEFMQDEHLDKALAIVVKLLMNPDVPSAKAPMLIMELQAMSTKFAVMSSVYSTIAKDKAGTINNNKKNVYYSVKESIDKLVDALKYVVRYNS
Ga0209084_100004998F103268GGAGGMTDYKLDAMYEIRKHLWNELVDKNIFEPSEYYSDNIGQELIPILPVQQQPELNQFLSGKKHIVFDKIGSSYNNLWTICDEKIMFTIYAIDIDDITEIRNLIIDVFRRMDDSAKDMNLAMPSSKFKYHNILILDISPTAPSMELQGFLSADIVIEVKYSRITDRAGRFN
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