NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209084_1000051

Scaffold Ga0209084_1000051


Overview

Basic Information
Taxon OID3300027749 Open in IMG/M
Scaffold IDGa0209084_1000051 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)113622
Total Scaffold Genes156 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)94 (60.26%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010226Metagenome / Metatranscriptome306Y
F010999Metagenome / Metatranscriptome296Y
F021943Metagenome216Y
F042217Metagenome158Y
F062554Metagenome / Metatranscriptome130N
F067723Metagenome / Metatranscriptome125N
F092044Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209084_1000051119F021943N/AMLTALDQELFPKLCEVVAMPLHNQWIYLIQKNGSSSLRLQQEQNNLDVFCNEQILSLDFVDVYIRNPKARYVSGVNTYLQHLFRDHPELDVKTALWFAKRYKFLNTHYLPQFHWVANLSQYLKPTTKIRFRDLKELDKITDFRDRALIDPPSQDFVKKLLENDPSAELWWYLDQILLDLDGKLLTWQELINHYKSNYPDIIAHVLPKT
Ga0209084_1000051132F010226AGGAMAIQVIKDTAGNVLWTTDKAQINSESTNVTYQVFATALGTANAVGNLYANAVSVPNGTTQEIYVGAGNYLTLTGNNFTALALGTASSAQEGVIGYGSNP
Ga0209084_1000051133F010999N/AMASLQGVKIMTPYSEIAAELAQRKANEYVPPSIPSVRQQPVEIPGVMYQTRELFQPVVSQPNKDNK
Ga0209084_1000051151F042217N/AMKVVKLNRRFRQYKKHGHVIAVRCDSWLGEGVPLEKICDTKLGARGFMPHNDWHAYFGKANGHGRRPFWITFRRESDLTLVLLSAQLTNNA
Ga0209084_10000513F092044AGGAGMSELMTKLLERLAEMFPDLGYQSKLEAYIASRRPMDVFDVERFQREFSQEFKGFL
Ga0209084_100005169F067723N/AMTQEQKLERWAEREVRRNIHTMIVDDESGGYVAFGRYHLRPSHQSFEVYTTGDNFIGTFSNKRTAISWCVADNHNQLRLAQSIKTLDTKKQTLSADIYCRRQVADRSRNNGFSEVVLTKLQPKVQQHALVDQELEKCLNSAKYIQLRGFQNETARTSGNQAN
Ga0209084_100005184F062554N/AMIRNISGSKYIQVSGGMHTNPYISPGASGAGMVRWSASMNCLEINDGNSWQQLHSSHPMIALSSDAETLLDWARAKRDEEWRIAAKAAEHPTVADALAAMQLAREKLQVVIALCDTTTK
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