Basic Information | |
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Taxon OID | 3300027749 Open in IMG/M |
Scaffold ID | Ga0209084_1000288 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 48279 |
Total Scaffold Genes | 63 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 50 (79.37%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002405 | Metagenome | 562 | Y |
F015571 | Metagenome / Metatranscriptome | 253 | Y |
F100390 | Metagenome | 102 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209084_10002881 | F015571 | N/A | ASKFGVRLFVSEVPMSDFRCAISNDIADDLFTTYSNQAQEIVSHVMVEQQTRFLDVMKSISHCCGVDETGVDANTGETKTKKRKIYDTTILKAKEMCESFKEFNLTDSPELEEARASLERALEGVDAELIRESDAVRTSVKEDIDSILGKFSSFSCV |
Ga0209084_100028827 | F002405 | N/A | MVSLMIPSELKEPEWIFPFQGMEIGDSFFIPTLRFAEMIYAVDSGSKRAKVRVKSYVTVKDSHVGVRVWRVG |
Ga0209084_100028859 | F100390 | AGGAG | MADVKYPDYTPVDEPVVKDYKVPAAGSGIRVEKEPKPMPKPVKKMASGGSASSRADGIAQKGKTRGTMVMCGGGYAKAKK |
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