Scaffold Ga0209084_1000482

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209084_1000482

Scaffold Ga0209084_1000482

Overview

Basic Information
Taxon OID	3300027749 Open in IMG/M
Scaffold ID	Ga0209084_1000482 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	37429
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	44 (91.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048855	Metagenome	147	Y
F051066	Metagenome	144	Y
F053985	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209084_100048234	F053985	GGAG	MFKIGINEHDEVAYVRIQIAAKAIHEAALLAYYCEGRKKQTFHDEMEREIEELLTLLGVDDRATACAINDTIETLEYRIENLRANLRVIEDLPPREIEDAWPAATHALREDDEHAARAAKQIR
Ga0209084_100048239	F048855	AGGAGG	MITTTTHSDATRTVTYYGRLLGYYAAVRYKRTHARAWRCVTVLGALGYARNERDARRWLMEMVP
Ga0209084_100048240	F051066	GAGG	MAKRKTYIDRDADENQKPYPKLAGLDRYRRAPDPDRRAYGQAVMAAIRALQARELQRAAPSHSCPCASGVWESDGQEILRAVRARNRRA

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