NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209084_1000687

Scaffold Ga0209084_1000687


Overview

Basic Information
Taxon OID3300027749 Open in IMG/M
Scaffold IDGa0209084_1000687 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31405
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (40.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037112Metagenome168Y
F054620Metagenome / Metatranscriptome139Y
F068582Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0209084_100068729F037112N/AMFTYRITYLLGKLDTSTCPPAIVPVIFPNFNGEPVTLTDSKITVTFQTEQTPVDLGALVKVELLPTN
Ga0209084_100068737F068582N/AMTTLYGIRTIAEQSVLDWFTTNSAALPGVQIVKGQTADIRSVPIIILHAESAQAHRDFGAKPSGNFEITFKIYIYSSADDNTLEEHRARVEAVQGIMQHDDGLKTAWTQGQLYATWINADDEGVADRRYGNALTYTLVCVYPPEAV
Ga0209084_100068739F054620GAGMAIQDEWASDASEILAEIPKSVTVRRGSGAAVSFNVLMSPPMVSQDLETGGFMSSTSYDVKFLKSQLSAHPDSVKYGNLIHFNGADYRIVAINDRPPSAWVIVRVQSKGEPA
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