NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209084_1001701

Scaffold Ga0209084_1001701


Overview

Basic Information
Taxon OID3300027749 Open in IMG/M
Scaffold IDGa0209084_1001701 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18102
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000354Metagenome / Metatranscriptome1244Y
F008493Metagenome / Metatranscriptome332Y
F010760Metagenome / Metatranscriptome299Y
F014848Metagenome / Metatranscriptome259Y
F056313Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0209084_10017011F008493AGGAGMTRRTPRKDCNYIIYEMTDEFGNNYIGLTRKSLPNTNKVVLERWRKHRSRARNEDRAWPLYQYLRDRLDGEWSHTVVAIVRGRAEAYAYERELVKTLQPTLNDQYCG
Ga0209084_100170139F056313AGAAGGMRIEGLTQHQVELLDEMWEIEEYTDLEAWMETLSPADRKEAEALQRLVVLETFEELLDKGNYPDARRVLVDIMSK
Ga0209084_100170140F000354AGGAGMAKVNYDNFASFDLNEACDHFDCTDQKAWKKIRPFIVADGEEYMEVMEKEFDFEEVTDTDHMVFEAGVKYALSKMNTAFEKAGIDLQICEVDLVESMGFMLVRADDEPEDFVKRVLKKPVLMVDSWV
Ga0209084_10017017F014848AGGAGMRYYDTIAEFSREGYDIIVDKSWEDLNPRDLFDDCVTDLDKLVEDINSGKLDWFFLRVRVMVEGLELAAEHVGGCLYENPKDVLTDGLAEDLIDQALASAKKEVYRLSKRFTELSYAVDAEGVTQ
Ga0209084_10017019F010760AGGAGMLDISKIVKTYSGKRGCMCGCLGKYSYTQDGATNHGPGYDVQDSVNERSVRIMAKKILAHPNVEWQDNIAYVEEGGRTRAIYFKEQA
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