Scaffold Ga0209084

Basic Information
Taxon OID	3300027749 Open in IMG/M
Scaffold ID	Ga0209084_1004462 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027749 Open in IMG/M

Scaffold ID

Ga0209084_1004462 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9817
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (93.94%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

9817

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (93.94%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015732	Metagenome / Metatranscriptome	252	N
F022415	Metagenome / Metatranscriptome	214	Y
F046380	Metagenome / Metatranscriptome	151	N
F048314	Metagenome / Metatranscriptome	148	Y
F050153	Metagenome / Metatranscriptome	145	Y
F052598	Metagenome	142	N
F057381	Metagenome / Metatranscriptome	136	N
F068423	Metagenome / Metatranscriptome	124	N
F074407	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209084_10044621	F048314	AGG	MKDSIEQAAEMLILGYTEHEIVRILRIHPSMAEELIQKAEQWNDQEFVPYTEEVVDEMADYYGEE
Ga0209084_100446217	F052598	GAGG	LRLRLQTTFLREWKAAQMIPRFKLTVTDEFHSDFVYETNDKEDVLDRVALWLSQLDNTPIYNLNIEVN
Ga0209084_100446222	F074407	N/A	MNKKIKALAIEAGLYVDFNGEPWPKNMTGEDIEGAYEKFAVLLINECAKKVDKVRRQGGWFYGEIIRKEFGLYDRD
Ga0209084_10044623	F015732	AGGA	MTKVTNLETAVSIVRNTPDKALALSEIMNILGVSRSNAFVYHTKASKILFSASNVDEVMAKVSPQYKKVSESVQGTTATKKAQKLKEIDAFLANAPTAKGNPFAALGA
Ga0209084_100446230	F050153	GAGG	MSKGSRARPLGVDFDKYSSNWNSVFGKSPKEIDDAVIEDEAFKLIEERNKNVISDQKPD
Ga0209084_100446231	F068423	GAGG	MDEDFDFNFPMEINYEKILTNNSILPMVRLLAADLMKNPYMSIGTFLQRARTDDLQLILEASEDEEDERLSDILLLAEMLAKAEGVETECIEDVYKHLNSFITLAAVASLERKGLIIADYDVMSFGEEYAHSTIAKRKP
Ga0209084_100446233	F057381	AGGAG	MRYFFNDVEVTATEYTDLINKSTPDVPAKFVMAIPVERAVTKPKPLPKKSVAKPASSGASKIDQAIELFKNNQGLTDAQFVTLFQLKLGDISKGNASIYLKKVKERTK
Ga0209084_10044625	F046380	GGAG	MSNWKTLDQSFETMSQAEALDIVQQEAVSMGMGLLETMTWMSDNYDELDSVQRNAFRTAFRGFQRLLAPVTE
Ga0209084_10044627	F022415	AGGAG	MSRMSELHMLITDAIACDLSEDLIIDLMVEEGLPREACPEILRVFKQVEAV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209084_1004462

Overview

Ecosystem & Geography

Associated Families

Sequences