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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027749 Open in IMG/M |
| Scaffold ID | Ga0209084_1007385 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7090 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (5.00%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (9.09%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Croche, Canada | |||||||
| Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001754 | Metagenome / Metatranscriptome | 641 | Y |
| F003291 | Metagenome / Metatranscriptome | 495 | Y |
| F005389 | Metagenome / Metatranscriptome | 402 | Y |
| F010916 | Metagenome / Metatranscriptome | 297 | Y |
| F011934 | Metagenome / Metatranscriptome | 285 | Y |
| F013298 | Metagenome / Metatranscriptome | 272 | Y |
| F017998 | Metagenome | 237 | Y |
| F031098 | Metagenome / Metatranscriptome | 183 | N |
| F037728 | Metagenome | 167 | Y |
| F038234 | Metagenome | 166 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209084_10073851 | F011934 | N/A | MITVQKTILHEWTHAQQTFRWYNHYNLKYGYKNNPYEIEARENEKLVKRAYKKSK |
| Ga0209084_100738510 | F003291 | N/A | MSTNQMNEKLVSVFNQDELAALMTAMAGYINVKRKQGRATGIESVVFNKVTDALLLSNYMNATVIDRGNGKMGVAEYKMSEAQLDSMYESDVRAHS |
| Ga0209084_100738512 | F010916 | N/A | MSTVQTIQDELLSLVMGHDWSYMMSDSHSVWEAGMRYEKEIQAKIHALVAVHREDAETLKGIVRGIAGSDYTDYDSKGYGLKYRTINGWFKPYIG |
| Ga0209084_100738515 | F031098 | N/A | MKTYYDIAIHTASNDVVNVKGVSYSMMMKIANDNPTLIKVEIVKEYSKKISKY |
| Ga0209084_100738517 | F037728 | N/A | MMKRLNITNFTHRVMEIHSDYFEVGYCSNGKDRYLIGLDTRDVVSFKPLEPKHYKMSIDKVTNEDGNYGIWLWDMGENISYPMSIMPDNISSLSEFTSFLNHTLKLANNGDFSGDTGNRVDN |
| Ga0209084_100738518 | F017998 | N/A | MNLERLDLEKYEVLELERDRTLADPLYQQWMSELKVSSSYTDREGIIRANDLNNQYTYSVLAGNKSTKFSVSSILSILK |
| Ga0209084_100738519 | F038234 | N/A | MLTIKNIGSLKDTYVGHWKIHYIAKLADTYIIKVVHNGSPFDMFNLMIGRVKTSNGDYLMYCQETGKTKNMPIEDIRNSYTFIRFLIDELI |
| Ga0209084_10073853 | F013298 | N/A | MGKGINPEATFDGLAKTLSNCHCVYEYIYVYDSIIRERLFEKLASIKGCEYEVIYQRWLSPIKKSL |
| Ga0209084_10073854 | F013298 | N/A | MSIREFYVKNYPSDDMGDGINPNATFDGLWEIINKYGLIKDVYDYLYVYDSLIRERVFEKLAANKGLEYDVIYYQWLKNTAL |
| Ga0209084_10073857 | F005389 | GAGG | MANKSKQAAKRTNLYETVSNNIQKITRPSGTVSYRVRVSEDGQMFSQYETSLKKAKALRNSWVG |
| Ga0209084_10073859 | F001754 | N/A | MSTIANPFRNFSASKMSNNPRFEVVVSFRDFLGKEHNIVCKNRKKLAEANQFLKMFKTESVKINSILSEYPVVMGAFPKKYHSEIKRELASAGFSTVSNFLIK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |