NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209084_1009191

Scaffold Ga0209084_1009191


Overview

Basic Information
Taxon OID3300027749 Open in IMG/M
Scaffold IDGa0209084_1009191 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6122
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004231Metagenome447Y
F015570Metagenome253Y
F024504Metagenome205N
F029673Metagenome187N
F043820Metagenome155Y
F063332Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0209084_100919110F004231AGGAGMSVKPSDFKHEICVYLEGIGECLVCFDILTPGDELDADHSDSYEIDFSVFDEQDKHITYDITKKQYNHCENKAMDEMLDITTAWHKEWETCFD
Ga0209084_100919111F029673GGAGLTKSEMVQHLRMAACNENTVTGMANAFDLGAEHERDVIASIIFNMVKEQHLAQNIVDTIRVRE
Ga0209084_100919112F015570AGGMNDKLDEAFDLLEFDVTDQIRNMEYLAEQKKISTGVTDGTIQRALVRDLTENLRTLPVSNDPLLIRNDVLEEVAVELAKLPFGDTAASYAAFVRAMKS
Ga0209084_100919113F024504AGGAGMDRPTVGITAPYRKSDYTYQDMLLDRIKDLETLVAKLEQRIKVLEAK
Ga0209084_10091912F063332GGTGGMTNPNELKEIKAFVRGLIEGIKDTHIDPGLVLNDYWNSWDETLDVNIWIDESDPNIYIATLYRVVNGVTDVETFQRLDYL
Ga0209084_10091916F043820AGGAMTKNEAHAHLNRLREGHPMPVALTTQALLITGDIPRIPDKPLCFDSNESTDDRDCEIQNQGTKEGFSYSRYLDSTTN
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