NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209084_1023786

Scaffold Ga0209084_1023786


Overview

Basic Information
Taxon OID3300027749 Open in IMG/M
Scaffold IDGa0209084_1023786 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3261
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005742Metagenome / Metatranscriptome391Y
F007116Metagenome / Metatranscriptome357Y

Sequences

Protein IDFamilyRBSSequence
Ga0209084_10237862F007116N/AMRRPVPNINVNTTQKLRDRAGFKQFILQVNTDTFIYSYFPNIIELNENKTLFTLTLLNKKFIFDILEVDNIKDYIDVYLFGVKQPQDRYNAVSDGSNIIVTFTVDITRIPQDVKTTDFEIKGKIAEIL
Ga0209084_10237863F005742N/AMKVTGLKNIMKEVNEPNEFELFADNLQHPYYWIFKVDNVRIKTLSPQVEKLRTPTARFDVFVNGLFISENDYVYDHNGNNFYIKFIKAKFPDFDRFGNVYEIDETDEVKINGDLEKFAI
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