NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209192_10000909

Scaffold Ga0209192_10000909


Overview

Basic Information
Taxon OID3300027752 Open in IMG/M
Scaffold IDGa0209192_10000909 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25812
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017559Metagenome / Metatranscriptome240Y
F022087Metagenome216N
F023713Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0209192_1000090912F017559AGGAMIVEAKKLNDGTIVNKYEVHLECAECGMHVDAEEYKSGTCSDCGAAWNGKQHTKVHVTSVPASGGTS
Ga0209192_1000090935F023713AGGAMKETLMLLSTRIEERRKELLESMGAGTAKDYGGYQHACGEVRGYLIIQNMISEAIRTHEHEEEDFDSSPTDNVVTMTKPGGKK
Ga0209192_1000090939F022087AGGMSKLKVPKLSPSEESDLFEPAIVMPAIESDVELPNARKKIIPDMTPEEEIRIRSHTIKTVSDINGENIEPSHEHQEQAKELAREMMTNKKIKPEFGQYPNETMAFLAGLVGQTNCMIVEELADLKLFVVNNFVQLAAMAKNDRDKLAALRAIGEIDGVDAFKKKTEITHITKSGDELEKELMATIEQLKGSIVEGEHEIIEDD
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