Scaffold Ga0209192

Basic Information
Taxon OID	3300027752 Open in IMG/M
Scaffold ID	Ga0209192_10005280 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027752 Open in IMG/M

Scaffold ID

Ga0209192_10005280 Open in IMG/M

Source Dataset Name

Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7947
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

7947

Total Scaffold Genes

3 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	73.2247	Long. (^o)	-150.2247	Alt. (m)	Depth (m)	7
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Arctic Ocean: Canada Basin

Coordinates

Lat. (^o)

73.2247

Long. (^o)

-150.2247

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004712	Metagenome / Metatranscriptome	427	Y
F074945	Metagenome / Metatranscriptome	119	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209192_100052802	F004712	AGGA	MSIVTIVTSQAPDAKPVAVNLVLSTNWQEIINVPNYEVPELVFGGSTTVEPGVGEVISPLVLCNTSANTVNVDVQVYRFDTNTNFYLIRNMPIPSYDTIPIPLNGQFLKSGDILEAKASADLAVHSTLSFTLGQSEEDDVV
Ga0209192_100052803	F074945	N/A	KCERDTGYLIDAITFDAQHQGNFATINFAKLYFENAILVGLPESQIEPTTAAYKHLGDCASLVVQDINLAGLKSAGNAASQDFSAASAGAPIGNEVEGLFDIVANAILNSTMLLSPPVTMPTLTTYSAENQSSFGEIENVKKTAQNGVLSHLAKYFEVLPYSEVKCRRDTGYIVDAISHDIQYGGNAATVQTAGMYFENAVNTGLQIEQRMGSRDAFLHMAKLVEHVVGAKHITTTQFPKIKTYYTGDILTQYDYWNGMESYQSIETQDTAVHGANPNTSIAARKLAEIVANAVDDNVEVGTTIPEMIDVDQTWQGQNYVVAKEIIEKSKVDISEKIISYLSNVHSGLSFRDAKCRRDIGYLIDAVSHDIQYGTNFATRQSAGIYFENGLSVLPVDTRAQTATIYDYLGTVMSNVVQEIDASNTTYSIFPQDTNGTAATATEGARVDVLMGYIESVIRANDTDALPAIEAPTTTWVPAPLVSAKTKIMDNSETLASDVTDFINSSFTVLDYDRTKCRRDTEYLIDAFSFDMNFGGNTASRWNADFYFWNQVYRLPEDQRIPTAKSYRHLGRICKDIVIGEYAGQKVLGGIASVVESTKVQGLADMFYKTQLYNDTKYLQGKEEPTYSSPVYKDASDIIGQNRVALSKDTVRYVGATYKYIDGNLTRRDARNLLTAIQNDFKYEDVIVPSPSYTTNGSSNATMTYTASFFNFDGRHVFPVFNGQRAKMKYQGSIQGPVSNGALASKTGMKPGHAYIIADDMNVSHYTGTIYYWDGSTWQLDGPNNTDLLDAFAGAWDRMRTNLVTNYSPDSTHSLMIEGLFNDCLKGNVLKPSTLIFGSLVESIAHQFNGASAGVNRNALPLNFRNLGSAISAIASVLNEDGGRIRWSGADELNNQYFARGLKINGRTGRIEGRPFTSSVRKLARRASNSRANI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209192_10005280

Overview

Ecosystem & Geography

Associated Families

Sequences