Scaffold Ga0208305_10009528

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208305_10009528

Scaffold Ga0208305_10009528

Overview

Basic Information
Taxon OID	3300027753 Open in IMG/M
Scaffold ID	Ga0208305_10009528 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4107
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2	Long. (^o)	-123.94	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010163	Metagenome / Metatranscriptome	307	Y
F046638	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208305_100095284	F010163	N/A	MLLLKIAKNSFFSHNTITHGYIKHTSHAIRALDFIKEETFSYYVQXLVLFXFTNLSNLKIKTNYFISYIYSSFLNNQKLLSYVININLSLTNTLINVNNVNGNPKFFYSAGMFNLQKKQKTRQPKAIITILRALLLKSKIFKTKPVAVHFNNLFFKYQSYIFKKLKQKIFAKLVTSYLYKAHNGCRLKKKKRIKIRTRTRKL
Ga0208305_100095287	F046638	N/A	MINTLKSSVFKNVAVLIHGPIILLNNDNNNTKLTFKELENINPLINLLGFRLNNKIYSKKQIKNLKKMSYLENIHIFHKSMKTFTKLPYYKLKSKQILPISK

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