NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1000138

Scaffold Ga0209596_1000138


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1000138 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)63710
Total Scaffold Genes85 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)61 (71.76%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012096Metagenome283Y
F013252Metagenome273Y
F015062Metagenome257Y
F016499Metagenome / Metatranscriptome246Y
F017424Metagenome / Metatranscriptome241Y
F036080Metagenome / Metatranscriptome170Y
F058556Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100013833F012096N/AMGLVYLVVAIDQFIKGGVGTGIMFLGYAIGNVGLVIVAK
Ga0209596_100013835F016499GGAMAKKFKFNEDLAKVILELGQQGASQKAMYAAINISKDTAAKLKKEDPLFAETMSLATTYGQAFWENMMLANIDNKTFNSRVAEISLRGQYPDDYRERMDIKQDIKQEVKIDFNKEVAELIAALKT
Ga0209596_100013841F036080N/AMNDRIDLESAVMLMWQTSDDIELLYKHHGDAPKPMTEDEVATALLGIKALHSLRCAALEDMYSRKFELDQYCTDPEKLAARDDWFDKVLNEARTKTKGKKK
Ga0209596_100013843F058556AGGAGMSTFVIEHIYKGYPMFETIRGVEDINLDLFDQFQTIWVCDNEEEVTAVENELRRKHGERSSKQP
Ga0209596_100013844F015062N/AMRTKTKHKINAVAPRLSDEDIDPIEQDDSENVTIPSNDGWLPWDPEDISDIRRLVTESMPEKQRLIIESFLDGLSYADIYVTEKYWRYHFVKGIEFLKKELKV
Ga0209596_100013875F013252AGGAGMANKKQEGELGFRQTYKQTGNQGFGGGPGEKNIDAGLSGSKRPNNAVKGKPARSSKVGPGKNLNDIGGGNFY
Ga0209596_100013876F017424N/AMKDFISEIIGRVKTEQNSIAETVTAGMNVNSFDDYQRLVGRHEGFKMVLDIINEILTEDEKDL
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