Scaffold Ga0209596

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1000243 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027754 Open in IMG/M

Scaffold ID

Ga0209596_1000243 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	50669
Total Scaffold Genes	65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (12.31%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

50669

Total Scaffold Genes

65 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (12.31%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003327	Metagenome / Metatranscriptome	494	Y
F007860	Metagenome / Metatranscriptome	343	Y
F035632	Metagenome / Metatranscriptome	171	Y
F038989	Metagenome / Metatranscriptome	164	Y
F050993	Metagenome / Metatranscriptome	144	Y
F076816	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100024317	F076816	N/A	MIGKKFGSIYSLMNDGLTVKDGRLINNRPDGKNGIEKAAELRKAIKRAEKIEMYSEAVALGDMKADMREEGMDMMMTFKGRKS
Ga0209596_100024323	F038989	N/A	MEKDKSVKTTVEQEKTPAEKLAFNNAAIIALQQNAATRDALRIKNKEIASASYARRRANRDSGGGARLKGLSVLNDGFAGTSGVS
Ga0209596_100024333	F007860	N/A	MKSNYLASLYFISGYATSLFMMFQGQEYYIVFGGITLFFYLTFTLTEALEELDL
Ga0209596_100024350	F035632	N/A	MEKFLGITVTNQQVQIVSATGIVLIEQDSTTTVGIHYKSSTGTDVVTITHAAAGAGDETMRDAIQDAVVRALTTSWTNVLYTVENLPYAVSNIAIA
Ga0209596_100024364	F003327	N/A	MKDKNEFVRIAIDKQNEIANGEYTHQKYLIFREWWFKTIQGSKRNAARSFAMFDLMYGLDVPIKNADVEDEI
Ga0209596_10002439	F050993	N/A	MRVIRINTSAWTEEDFYLVTTLDDEDIVEVINPLVNAERDGYEQYDNDSLLQALKDRFPCDHVDMYTEFDKLTF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209596_1000243

Overview

Ecosystem & Geography

Associated Families

Sequences