Scaffold Ga0209596

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1000402 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027754 Open in IMG/M

Scaffold ID

Ga0209596_1000402 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	40171
Total Scaffold Genes	65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	56 (86.15%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (80.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

40171

Total Scaffold Genes

65 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

56 (86.15%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001538	Metagenome / Metatranscriptome	674	Y
F001915	Metagenome / Metatranscriptome	617	Y
F004432	Metagenome / Metatranscriptome	438	Y
F004695	Metagenome	427	Y
F006264	Metagenome / Metatranscriptome	377	Y
F017628	Metagenome / Metatranscriptome	239	Y
F079997	Metagenome	115	Y
F098944	Metagenome	103	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10004021	F017628	AGGA	MATYDIDALKVDLPSAKELAQFVYDKTDGVVSLDLIGKPKEEQYIVAKNALEGKKVPAEYMTGFNPYVDKKDVIPEDPLRKMPKRSIDLPDEESQIHYFGATNMPHPLDPQSDKKVYIDFRKYENGLITYQIT
Ga0209596_100040219	F079997	AGGA	MMPQIDIGARFANHRFKLCTKCDISKPPEGGIDMGHKWICQMCWNKRITGKYFKQNQEKN
Ga0209596_100040240	F004432	N/A	MVTKKTPAKVAPVKRSVAKPKPTIALPSSKIQTKKDDSTLGKVIGLIEWVDNPFKLFTVILLSFLAFAGYFAWDSRQVILHAITTQDKMPQLAKQENLIAPARSLLKDLDGIVLLIHKANLSTNSRTTILALNADGSREKSIEGSITSLFNASADRNSAMVAMLNGEILCEEFNPSSKVGEWGVKQGVKFMCRGSIPPDMGKFAGYVAIGFKNKPEDIAALKTRINLAATDMSED
Ga0209596_100040241	F001538	GAGG	MIDTIKLFPTVQPSGYPDRHDLAQAKLEKQHEMNKANELAKQKQTQLQDIAFEIYTKKVVQERLRMEIFTNRKLDILV
Ga0209596_10004025	F098944	AGG	MFEEIRPEGSTVTSEEIKKKARDYAKAKRAQNKAMKLATGQIEPKEAVETIPVDEFDMTAFVPRSQKAAGGRPKSIVNKVTEYGALFNKLNDERTSRGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDAEDALNEFMESLRKS
Ga0209596_100040257	F000857	GGAG	MELNLNNEEAKVNEDYYIGGVLSGGLEGALIKNDKMFNEVKSGTWSQTFSTPNMNYKVGAIDGERYVQYEQKNVESVKQYCKERREFYKMIGTTDNPLFAGTFEAMNLPKCFAHEISGKWFNNRPWDLIKQDKKDKILFYAIVNQFYSDFVCHPSGKIPLPYNPIVPTK
Ga0209596_10004026	F001915	AGGA	MEWTLAHPLHDVDDIVNMADSVFGHEADGILTRDKAVFRKNVTIATTVQLFDRSKEFIAVCRGPKVIDTFLGQAEVNDALLAYCWFDRGGYTTYANEEISNAKFHHVDLQLSPRLRVRLINEMIDQHILWADRWYIPVVCSTSIRAEHDGFMKIHKKRGFTVHGSYAWLRTEKGMECLKK
Ga0209596_100040261	F004695	AGGA	MLDKQNVIVENLASSSGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKINFEFERFSEADGDQARQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMVSPVRNPITQYKEVEGTRDQLRVFETLAGDKGLTAKRQNMRKIDVDLQGAMQEAMAPDESEAMQEPTGDELQEALRNNTIYRAKYKLTGYETSIRVKHVAQHYFVCNPTISTIQDQDFVGFYDPMTIHECKTQFPFVDLELLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWIRRDIDGDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPLQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPTKHIFEFQPMQGNLAYVESAMNRFESDKMAMIGMTSPSDTLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLVQYSDDFNIQQLAATCLKGQEFLDAKSIENFEFIDRKMINIDLALGFLSEENRLTRQQMILQAQQQFAQAMMMIPQEVPEMFIKVRRPFEDTLRVLGVKDVDAYLPTMEEAVKIMQAQAAKGPSAEQQETASKVELNKAKVQESGSVTALNIRKAQDIDTDDMFEALAAKKGKLSAVQVD
Ga0209596_100040263	F006264	N/A	MEDPSNIFQSKLSSQAEVCARKTLEWLQKDLQGERKLQPDEVYWLSYAAHTLLNIRDSYGKK
Ga0209596_100040264	F001059	AGGA	MATYDIDALKADLPTAKELAQFVYDKTDALVSLDLIGKPKEEQYIVAKNALEGKKVPAEYLTGFNPYVDKKDTIPEDPLRKMPKRSIDLPDEEAQIHYFGATNMPHPLDPQSDKKVYIDFRKYENGLITYQITGPVEKVPFGEKLNKYGQTVPEKYTWIDPRTEERVLRNPDGTFTKDGRGVHTFLIGEKGGGVWSMIDKDVVSISAKNISDPWA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209596_1000402

Overview

Ecosystem & Geography

Associated Families

Sequences