 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027754 Open in IMG/M |
| Scaffold ID | Ga0209596_1000511 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 35599 |
| Total Scaffold Genes | 58 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 44 (75.86%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 8 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000635 | Metagenome / Metatranscriptome | 970 | Y |
| F002149 | Metagenome / Metatranscriptome | 589 | Y |
| F003304 | Metagenome | 494 | N |
| F010449 | Metagenome / Metatranscriptome | 303 | N |
| F020665 | Metagenome / Metatranscriptome | 222 | Y |
| F022371 | Metagenome / Metatranscriptome | 214 | Y |
| F037193 | Metagenome / Metatranscriptome | 168 | Y |
| F058800 | Metagenome | 134 | Y |
| F073257 | Metagenome / Metatranscriptome | 120 | N |
| F102823 | Metagenome / Metatranscriptome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209596_100051123 | F058800 | N/A | MKQTLSKLFYFLGDTISRTLLRTGIGYGLYKTFMLWSIELDEKFDVWKEVKPRRRKKK |
| Ga0209596_100051124 | F003304 | GGAGG | MKQALVTQSFGDDWKNIIDLTRPRMEAYCKRHNTDFILIDKPLTHPAQYSKSAIGNIMATKGYEQVTFVDADVLIAADCPKLSDDAGVFCAFDEGAYLDRKPDMVKLAGAFGGIIEPKFYVNTGVFVVHSKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRHKDAMIIHYAGQSNDLVKLANQIQADDAKLVELGR |
| Ga0209596_100051126 | F022371 | AGGA | MFCLVEIADIAWVIASFVLYSSLLLSALYCALFIIFKLIDYIKKELDL |
| Ga0209596_100051127 | F020665 | AGGA | MRKRKAGKHIKLLKVEEYDAVKITVNVDDDLYEAMAEAGRQHIVKDKMACFEYALNQSLLELSKEIK |
| Ga0209596_10005113 | F010449 | GGGGG | MSEDQIWNMEVRLARMEERQVQLYAMVERSLAFHGDVANRLGALEHLRTKVLAVAGLIGLACSMAWDVLKNRLSN |
| Ga0209596_100051133 | F037193 | AGGA | MKSKDEIAMQVKKEWDNQNLRWKLWVEAGGFRTEIFCYSSAEEEYSKCVKELVDQAYKMQSI |
| Ga0209596_100051135 | F102823 | AGG | MSALYDWIIVGAGLAIGKLLVAIAVITAITAILAVLFIIEEKTK |
| Ga0209596_100051138 | F073257 | AGG | MSNTESTKHKFYYGEETYTICVTKDDWWLEESVDMSELMMKCGEEFALDHGMMPPEGLCVECWKGKYLDVVEDYYIGGTTIKDLDLRRCYKCKHTVLPWQSADRVDEVLEALKKPAELCPTCRKSNTIEFTGDLKMDSVCKLNGEPFTAPNITRTQCPVCKDEFFTMSELKKIDAAIREEQSRLGIQP |
| Ga0209596_10005116 | F000635 | GAGG | MTLTEIAQYAGEKVGKTDSDTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTNRQITLGTNVETPLSVAYNDAEVDPIDLATIISQDPGLLSDDRTGDPDTYHFTGRNSSGVAQLNLYPRLATSGTIPLRVVEKLKCITRSNYIVDFPPSTDALGDELRLPHVHHLVLALTHADALERERQYAKAQAITQGANSDLAAMANYELSQVGGIKQITPQSLGELTIEEMFSA |
| Ga0209596_10005118 | F002149 | GGA | MTAIEYIEQSNVPEAMWPNLAEWFGWFEKQGMVGIVEDKDGIAGVALARCIKDGQEPKHYVHSEDGENVFVDLTISSKGAKSLRCLLLLLWERFGPRKRITFNRSGKPRSYDYMTFMRKARV |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |