NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1001855

Scaffold Ga0209596_1001855


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1001855 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17812
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (78.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000961Metagenome / Metatranscriptome820Y
F012002Metagenome284Y
F071151Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100185515F000961N/AMASPEIDLVKYGVLWQKVQDYERRFDQMETKIDKLEASIDTLIGLANQGRGGFWMGMVVVSALSSVLGYLGHWVGKSG
Ga0209596_100185516F012002GGTGGMRRTLLFLALVTVSIAQDKLILSDAPPPLPKKQPPKSSCAVQELYVIAWSTHDPIERHKAMLGWLDKTKCSADDYVLIWNNLPEWAGTSDSPALRAKVMEKAR
Ga0209596_100185528F071151AGGAMTCCDYGKCTNGPDCPVRKQRIKEINDAYANGYNDAQLGDSLDDLADTFKALLTMVTVVLGVWVICLVIWGK
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