NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1002297

Scaffold Ga0209596_1002297


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1002297 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15822
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006696Metagenome366Y
F049495Metagenome146Y
F052465Metagenome / Metatranscriptome142Y
F071151Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_10022974F052465AGGAMLNNERNTLKRVSMLERLHQRYNTLRVARERLELLKEAKLP
Ga0209596_10022975F006696GAGGMKFIKFLKDYYRDLTPAEVIQRELAQAHLDRLEAEAACEYAQAVLDMNMTRIERLNTRLGEYK
Ga0209596_10022976F071151AGGAGMNTCCDYGKCTNGPDCPVRQKRLKEINDAYANGYNDAQLSDPIDDLADTFKALLTMMAVVLCGWIAFLLFWGK
Ga0209596_10022979F049495GAGMSDLPNFAAWNHETLAKFALDSYLRMQAQQDAIEQLRGDLKDAMQLVRASTFSVDD
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