NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1002322

Scaffold Ga0209596_1002322


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1002322 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15733
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (62.96%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001848Metagenome / Metatranscriptome626Y
F004547Metagenome433Y
F012116Metagenome283Y
F068573Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100232214F004547AGGMKVLAYFTVLVIFWLFLIDTPYAKDLVKEMVMVTEAGEIVLTSEECIFKKEGLQGYDYAAYATDKGHPNHEGCWKSDNYEGKHAVYIYFPEINQTAVFDAKLFKPKATI
Ga0209596_10023222F012116AGGAMKPIAWLVEEFDSTGVLVWSGLMSSEPKEMSWFKDLKSKLHNVTITPLIPDTQNIVKVTNAKKYDSKKLTEAYSGE
Ga0209596_100232221F001848N/AMILNYIPKDQLRSHWDYVKHGLELVRAKGHTEWIVEDVYCDCYENRSMLFIGIVDNKPVGFVVLQPIGNTLHVWATWSTLNDKTLFQQAWQEIQAIAKQGGKSRVTFSSQRKGWERSARELGFKPQTWEFIL
Ga0209596_10023223F068573GGAGGVANNPLTQEQIIGAYKKAFPTKYEPMTIERMIQFARLIEELHGVGHVY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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