NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1003214

Scaffold Ga0209596_1003214


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1003214 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12997
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (85.19%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015467Metagenome254Y
F023588Metagenome209N
F024783Metagenome204Y
F036672Metagenome / Metatranscriptome169N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_10032141F036672N/AESMMKLWGEFHALLWTIAASVTTILTLSGAIQRVVIWLTVGALVLHLIGALTKKEDNS
Ga0209596_100321411F015467GGAMRRITATIVTTLTLAIGIGTAHAVQAPEPTHSPSVTRTQVIPKESQPTIKFQHGDISWLPQLAQQAGWPKKTWRKLGMIVLRESGACPYRKGGDIVNKNCEVTGHDGSNHASDSGLLQINGVNYNLSRNKWAAVCLAKIACTQEPLLDALTNLRAGLVLYKIAGWSPWTVPEGGW
Ga0209596_10032144F024783N/AMDWGIVVAALVTAVGGVMTTLMVVMRNENTQDHAKVVDALDVLSGNVTNIGTKLDSHIDWHLKGTTNGETIAGNKVAKPKRNIKAR
Ga0209596_10032147F023588GGAGGMSKPMVLVTWADAHSGVATWTPIDSLDKDEMLVYTCGFLLATCDGGKPDHITIYQSRTMEDDIDHVLHIPVAMVRHIAICTPETLMK
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