NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1003294

Scaffold Ga0209596_1003294


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1003294 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12787
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (17.65%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001055Metagenome / Metatranscriptome791Y
F001298Metagenome / Metatranscriptome727Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100329410F001055N/AMGTASIRHIVESTLATYLSTQTGLTTVSFLTGDNAATQTLPKAVVLCDSARTPSSLPDGAGNYDCSLRITLFSNADDTTLADHRARCAALVGNMRDLTSIKAAFVAGGDATCYDVIIQSEDEGVDERSWATSFAFSVWTCLAP
Ga0209596_10032948F001298AGGMSLYGTEFLNDAKEMIADFGVAGSANSGAITFQCLISDPAVTTVLEAGGYCERTQYTVRVPAVTASWSLPDGSIGSSAALLSAGVPIASLAQGKKIVAGGLNVRITTQTYKPASAWITLLVIDDNQ
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