Scaffold Ga0209596

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1003382 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027754 Open in IMG/M

Scaffold ID

Ga0209596_1003382 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12574
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (16.22%)
Novel Protein Genes	12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (16.67%)
Associated Families	12

Scaffold Components

Scaffold Length (bps)

12574

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (16.22%)

Novel Protein Genes

12 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (16.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000785	Metagenome / Metatranscriptome	891	Y
F007690	Metagenome	346	Y
F010683	Metagenome	300	Y
F017129	Metagenome / Metatranscriptome	242	Y
F018001	Metagenome	237	Y
F018718	Metagenome / Metatranscriptome	233	Y
F019478	Metagenome	229	Y
F021979	Metagenome	216	Y
F023789	Metagenome / Metatranscriptome	208	Y
F029999	Metagenome / Metatranscriptome	186	Y
F039484	Metagenome	163	N
F084228	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100338214	F023789	N/A	MDTTNTHRLTPVERIELQSKIQRLQWLLKECIGIEEYELCSQIRNIIQTKTAILNENQSTNG
Ga0209596_100338215	F000785	N/A	MRVTNKKGMKFDCTRLMKWAEDKLGKSKCTAIAFTWEPTEESCGWYNWDETIWINLASCKRMITVQKTLLHEWTHAQQTFRWYNHYNVKFGYKNNPYELAARENEKLVKRAYKKQK
Ga0209596_100338219	F018718	N/A	MNIREFYLANYPSDDLGLELNKTPTFAGLLNQLIVGGDVYRYIGVGDSIIRERLFERLAEELEVSYEYVYNLWLK
Ga0209596_100338221	F010683	N/A	MNKRVTKKSVKPAKKVASKKATAMNIIKHKRVVLESVGTESLPDMVFVSAAPAWAKAIVGKRYVSLDRAKAIIETLDAEKLISKGAKNLLKEMDAAGIVPLDVDSI
Ga0209596_100338224	F029999	N/A	MSTIANPFKNFSASKMSNNPRFEVVVSFTDFMGKSHNIVCKTRKKLVEANQFLKMFKSESVKINSILREYPVSMGKFPKKFHKEIKSDLQSAGFGTISKYLLK
Ga0209596_100338231	F017129	N/A	MNTTYYNYNDVQAYQALESERAGIELDPSYQQWVKELNVSQSYVSPEGAIKAKYLTDQYSFSTSEPKSSFLNFLKIKGIWS
Ga0209596_100338234	F007690	N/A	MLTIENVDKLVNQGIWDGWEVREILEGTHNNTYIFELARYRAHQGYATEKCIIMLERTGHTLPNKSNLVYFFIYNSQRTDICASADWLADKDNMIAKLEYILVNKENL
Ga0209596_100338235	F018001	N/A	MLTIQNIEYLKGKELNDWKVLDAGEDLRSRMGKNVYLLTFARIDKIGVMQDDRAGVIIDRNINPLLKGYHIKIVYEDWTYEIDTIVWPAENIRNKDVFFGRVLYKINEEYWKRNK
Ga0209596_100338236	F084228	N/A	MLTIENITKLENRKLIGGWVVRDMNCHPTRKKYIFDIHCMSPIGVCMDRCTISLNRIGELQRNMFKPDTTAYFFNYNGERTDVCVTGEWIKNPENFISQLKYIINEYHNKQ
Ga0209596_100338237	F019478	AGG	MVLKIINVNKMVGTVYWNRRFKCLQVHETDTNYRFQFDDSEVPSRYVWVEVRKDGRMDSDGDWVYSLNYMRCNQHSITAKWF
Ga0209596_10033826	F039484	GGA	MIIQNPDKLLKQWIPTTDGNLWFVDDVSVTMDSHGTAYIFRCIVELPVTISPNQQYYHQSRRVHKEVKLRLTETDYGKNNVYSVSTDEKVWRGYCKDIDTMNKFISVLADLLPNTDNL
Ga0209596_10033827	F021979	N/A	MLTIENINILNSKFAGTAEWQIGEMFIGEQNYIFQIHKRVGEWTIQGIKHKEFTIQLVRERLVMGGYVMDTGIVKQNFRWRSIHNIEDFRTITGFTMCLDGHIKNVIR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209596_1003382

Overview

Ecosystem & Geography

Associated Families

Sequences