NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1003650

Scaffold Ga0209596_1003650


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1003650 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12044
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (51.16%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011914Metagenome / Metatranscriptome285Y
F016774Metagenome / Metatranscriptome244Y
F044916Metagenome / Metatranscriptome153Y
F048101Metagenome / Metatranscriptome148N
F049419Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100365015F048101AGAAGMKKFKNIKDFLKTCSEDEQEYIYDLYNNASVADLIELLFEHLPAHNAMKEIKGYREEVKEEMEWDDAEAKKLNTRKCDCDFVGCQGC
Ga0209596_100365026F016774AGGMTPKKNKIIINKEQLESLNHWRDQILKMEKSYYSKDVEKERTCRNMINKYLDEVLDYNKNIKDKPKKQV
Ga0209596_100365033F049419AGGMKLPKFDYLNLATTYILFGLIYGVIVAVVWNYLFEPISNIHLSILQGFGIHLMTRILFGNTNTNYISNFYTPKVPDLDKIDTYLKEMQEDLDKQADEVERQYEDLDKKD
Ga0209596_100365038F044916N/AMAKRKSKIEKSLDKEQKTFGLMAKKIIDAIKDEKELRAFAKTSLEILYKDNPNLFSDHAKLKLKKK
Ga0209596_10036506F011914N/AMITDNQIKAMSENELAYLYYALNTEWTSLNMGYEFDWYILKAFRNDMIQLALNKHSANLTDENKGITIEILNKLESNI
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