NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1003810

Scaffold Ga0209596_1003810


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1003810 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11697
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (95.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009954Metagenome / Metatranscriptome310Y
F016152Metagenome / Metatranscriptome249Y
F031365Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100381013F031365AGGMAKDVIVLTGIKETLKALESFDKQAVRDFTKVINSELSAAKKDAQGLVSSAPPLSGWSTTPSAKPRSRGGAGWPAWDQSVIRAGISTSKAERKVRRDYTTSAGALINRSAPGVIYELAGRTNKTAGKNKFISNLNKNTFSPSRLIWKIVDRDKDKIERNVAQALDNAKSTLQKNLEKERA
Ga0209596_100381014F016152N/AMLSVETGISPNDLLDAPDGVLESIVIYLKQKNKDAGA
Ga0209596_100381015F009954GAGGMDGLQIKVKTSDGVEGTYSLRPRSIVAFEQKFGKGFAKLLSEDQKLEHIYFLAWSALKDGGKVVKPWGDSFLDTLDSVELVVDPNLESTETA
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