NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1008131

Scaffold Ga0209596_1008131


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1008131 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7278
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001733Metagenome / Metatranscriptome644Y
F006623Metagenome / Metatranscriptome368Y
F031872Metagenome / Metatranscriptome181N
F039641Metagenome / Metatranscriptome163N
F050378Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_10081312F031872GAGGMVESLVVDEWIYDTLTADATLQGLLAVDNRSPSYQQGIYLYLAPEKDPISLRQPQVPYIVVRHTDAGQTDTTSMCGGRIVTTSSHQVWCWDTQSGAVSMARIKGIVDRIDTLLNKQTVSSTTPPFFLNRSSVSSSIDVSQDGRVDNGISQLYVATISP
Ga0209596_10081316F006623AGGTGGMNLQNYRLELNPNVPGDWIVFGDITDNDGNLLGTFGPDGTSIFTWWVTQDVAFQQQYSNQFAVIMAQEIVTGTAE
Ga0209596_10081317F001733GGAGGMNSISIKRLVVVVIVAFVAAFTSVFGDGIRTSEAHDLGELGAVLALYGSKAVAAGVSAAVSSVLAFLTMPFKGTGINALKVGK
Ga0209596_10081318F050378GAGMWVQIGIQAFITTMSIGAAWVALQVRLTRLETQVAHIISTLDTQQQEVRRIEQRLGKLENKVSALEAVINR
Ga0209596_10081319F039641N/AMIPAGYSTALKNAIQAYSYADRVAIWRTVNQADGIGGVSQHWIQVAEIRGTISNTGDTEGVVGGMIEQSGTWTLTCSPDVEVRADDRIYTSGNPQNLAPYYEVIGSDYGHTNAVSQTIGLRARTNG
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